BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 27460370)

  • 1. Phylogenomics Using Transcriptome Data.
    Cannon JT; Kocot KM
    Methods Mol Biol; 2016; 1452():65-80. PubMed ID: 27460370
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SCaFoS: a tool for selection, concatenation and fusion of sequences for phylogenomics.
    Roure B; Rodriguez-Ezpeleta N; Philippe H
    BMC Evol Biol; 2007 Feb; 7 Suppl 1(Suppl 1):S2. PubMed ID: 17288575
    [TBL] [Abstract][Full Text] [Related]  

  • 3. From cacti to carnivores: Improved phylotranscriptomic sampling and hierarchical homology inference provide further insight into the evolution of Caryophyllales.
    Walker JF; Yang Y; Feng T; Timoneda A; Mikenas J; Hutchison V; Edwards C; Wang N; Ahluwalia S; Olivieri J; Walker-Hale N; Majure LC; Puente R; Kadereit G; Lauterbach M; Eggli U; Flores-Olvera H; Ochoterena H; Brockington SF; Moore MJ; Smith SA
    Am J Bot; 2018 Mar; 105(3):446-462. PubMed ID: 29738076
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Resolving interspecific relationships within evolutionarily young lineages using RNA-seq data: An example from Pedicularis section Cyathophora (Orobanchaceae).
    Wang HJ; Li WT; Liu YN; Yang FS; Wang XQ
    Mol Phylogenet Evol; 2017 Feb; 107():345-355. PubMed ID: 27908741
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics.
    Allio R; Schomaker-Bastos A; Romiguier J; Prosdocimi F; Nabholz B; Delsuc F
    Mol Ecol Resour; 2020 Jul; 20(4):892-905. PubMed ID: 32243090
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring Phylogenetic Relationships and Divergence Times of Bioluminescent Species Using Genomic and Transcriptomic Data.
    Amaral DT; Romeiro-Brito M; Bonatelli IAS
    Methods Mol Biol; 2022; 2525():409-423. PubMed ID: 35836087
    [TBL] [Abstract][Full Text] [Related]  

  • 7. OrthoSelect: a protocol for selecting orthologous groups in phylogenomics.
    Schreiber F; Pick K; Erpenbeck D; Wörheide G; Morgenstern B
    BMC Bioinformatics; 2009 Jul; 10():219. PubMed ID: 19607672
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High-Performance Computing in Bayesian Phylogenetics and Phylodynamics Using BEAGLE.
    Baele G; Ayres DL; Rambaut A; Suchard MA; Lemey P
    Methods Mol Biol; 2019; 1910():691-722. PubMed ID: 31278682
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Impact of missing data on phylogenies inferred from empirical phylogenomic data sets.
    Roure B; Baurain D; Philippe H
    Mol Biol Evol; 2013 Jan; 30(1):197-214. PubMed ID: 22930702
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Agalma: an automated phylogenomics workflow.
    Dunn CW; Howison M; Zapata F
    BMC Bioinformatics; 2013 Nov; 14():330. PubMed ID: 24252138
    [TBL] [Abstract][Full Text] [Related]  

  • 11. TAG Sequence Identification of Genomic Regions Using TAGdb.
    Ruperao P
    Methods Mol Biol; 2016; 1374():233-40. PubMed ID: 26519409
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists.
    Naranpanawa DNU; Chandrasekara CHWMRB; Bandaranayake PCG; Bandaranayake AU
    Sci Rep; 2020 Oct; 10(1):18236. PubMed ID: 33106560
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Guide to Phylogenomic Inference.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2024; 2802():267-345. PubMed ID: 38819564
    [TBL] [Abstract][Full Text] [Related]  

  • 14. afterParty: turning raw transcriptomes into permanent resources.
    Jones M; Blaxter M
    BMC Bioinformatics; 2013 Oct; 14():301. PubMed ID: 24093729
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Next-generation phylogenomics using a Target Restricted Assembly Method.
    Johnson KP; Walden KK; Robertson HM
    Mol Phylogenet Evol; 2013 Jan; 66(1):417-22. PubMed ID: 23000819
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phylogenomics.
    Patané JSL; Martins J; Setubal JC
    Methods Mol Biol; 2018; 1704():103-187. PubMed ID: 29277865
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Automated Removal of Non-homologous Sequence Stretches with PREQUAL.
    Irisarri I; Burki F; Whelan S
    Methods Mol Biol; 2021; 2231():147-162. PubMed ID: 33289892
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assessment of phylogenomic and orthology approaches for phylogenetic inference.
    Dutilh BE; van Noort V; van der Heijden RT; Boekhout T; Snel B; Huynen MA
    Bioinformatics; 2007 Apr; 23(7):815-24. PubMed ID: 17237036
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Phylogenomics from Whole Genome Sequences Using aTRAM.
    Allen JM; Boyd B; Nguyen NP; Vachaspati P; Warnow T; Huang DI; Grady PGS; Bell KC; Cronk QCB; Mugisha L; Pittendrigh BR; Leonardi MS; Reed DL; Johnson KP
    Syst Biol; 2017 Sep; 66(5):786-798. PubMed ID: 28123117
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A phylogenomic framework and timescale for comparative studies of tunicates.
    Delsuc F; Philippe H; Tsagkogeorga G; Simion P; Tilak MK; Turon X; López-Legentil S; Piette J; Lemaire P; Douzery EJP
    BMC Biol; 2018 Apr; 16(1):39. PubMed ID: 29653534
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.