234 related articles for article (PubMed ID: 27467247)
1. AptaTRACE Elucidates RNA Sequence-Structure Motifs from Selection Trends in HT-SELEX Experiments.
Dao P; Hoinka J; Takahashi M; Zhou J; Ho M; Wang Y; Costa F; Rossi JJ; Backofen R; Burnett J; Przytycka TM
Cell Syst; 2016 Jul; 3(1):62-70. PubMed ID: 27467247
[TBL] [Abstract][Full Text] [Related]
2. RaptRanker: in silico RNA aptamer selection from HT-SELEX experiment based on local sequence and structure information.
Ishida R; Adachi T; Yokota A; Yoshihara H; Aoki K; Nakamura Y; Hamada M
Nucleic Acids Res; 2020 Aug; 48(14):e82. PubMed ID: 32537639
[TBL] [Abstract][Full Text] [Related]
3. FSBC: fast string-based clustering for HT-SELEX data.
Kato S; Ono T; Minagawa H; Horii K; Shiratori I; Waga I; Ito K; Aoki T
BMC Bioinformatics; 2020 Jun; 21(1):263. PubMed ID: 32580745
[TBL] [Abstract][Full Text] [Related]
4. APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data.
Caroli J; Taccioli C; De La Fuente A; Serafini P; Bicciato S
Bioinformatics; 2016 Jan; 32(2):161-4. PubMed ID: 26395772
[TBL] [Abstract][Full Text] [Related]
5. Searching the Sequence Space for Potent Aptamers Using SELEX in Silico.
Zhou Q; Xia X; Luo Z; Liang H; Shakhnovich E
J Chem Theory Comput; 2015 Dec; 11(12):5939-46. PubMed ID: 26642994
[TBL] [Abstract][Full Text] [Related]
6. The Effects of SELEX Conditions on the Resultant Aptamer Pools in the Selection of Aptamers Binding to Bacterial Cells.
Hamula CL; Peng H; Wang Z; Newbigging AM; Tyrrell GJ; Li XF; Le XC
J Mol Evol; 2015 Dec; 81(5-6):194-209. PubMed ID: 26538121
[TBL] [Abstract][Full Text] [Related]
7. In silico approaches to RNA aptamer design.
Hamada M
Biochimie; 2018 Feb; 145():8-14. PubMed ID: 29032056
[TBL] [Abstract][Full Text] [Related]
8. AptaPLEX - A dedicated, multithreaded demultiplexer for HT-SELEX data.
Hoinka J; Przytycka T
Methods; 2016 Aug; 106():82-5. PubMed ID: 27080809
[TBL] [Abstract][Full Text] [Related]
9. Identification of sequence-structure RNA binding motifs for SELEX-derived aptamers.
Hoinka J; Zotenko E; Friedman A; Sauna ZE; Przytycka TM
Bioinformatics; 2012 Jun; 28(12):i215-23. PubMed ID: 22689764
[TBL] [Abstract][Full Text] [Related]
10. Characterisation of aptamer-target interactions by branched selection and high-throughput sequencing of SELEX pools.
Dupont DM; Larsen N; Jensen JK; Andreasen PA; Kjems J
Nucleic Acids Res; 2015 Dec; 43(21):e139. PubMed ID: 26163061
[TBL] [Abstract][Full Text] [Related]
11. A Capture-SELEX Strategy for Multiplexed Selection of RNA Aptamers Against Small Molecules.
Lauridsen LH; Doessing HB; Long KS; Nielsen AT
Methods Mol Biol; 2018; 1671():291-306. PubMed ID: 29170966
[TBL] [Abstract][Full Text] [Related]
12. Large scale analysis of the mutational landscape in HT-SELEX improves aptamer discovery.
Hoinka J; Berezhnoy A; Dao P; Sauna ZE; Gilboa E; Przytycka TM
Nucleic Acids Res; 2015 Jul; 43(12):5699-707. PubMed ID: 25870409
[TBL] [Abstract][Full Text] [Related]
13. SELEX and dynamic combinatorial chemistry interplay for the selection of conjugated RNA aptamers.
Bugaut A; Toulmé JJ; Rayner B
Org Biomol Chem; 2006 Nov; 4(22):4082-8. PubMed ID: 17312962
[TBL] [Abstract][Full Text] [Related]
14. The Bioinformatics of Aptamers: HT-SELEX Analysis with AptaSUITE.
Hoinka J; Przytycka TM
Methods Mol Biol; 2023; 2570():73-83. PubMed ID: 36156775
[TBL] [Abstract][Full Text] [Related]
15. In vitro RNA SELEX for the generation of chemically-optimized therapeutic RNA drugs.
Urak KT; Shore S; Rockey WM; Chen SJ; McCaffrey AP; Giangrande PH
Methods; 2016 Jul; 103():167-74. PubMed ID: 26972786
[TBL] [Abstract][Full Text] [Related]
16. NMR monitoring of the SELEX process to confirm enrichment of structured RNA.
Amano R; Aoki K; Miyakawa S; Nakamura Y; Kozu T; Kawai G; Sakamoto T
Sci Rep; 2017 Mar; 7(1):283. PubMed ID: 28325909
[TBL] [Abstract][Full Text] [Related]
17. A simple method for eliminating fixed-region interference of aptamer binding during SELEX.
Ouellet E; Lagally ET; Cheung KC; Haynes CA
Biotechnol Bioeng; 2014 Nov; 111(11):2265-79. PubMed ID: 24895227
[TBL] [Abstract][Full Text] [Related]
18. An improved SELEX technique for selection of DNA aptamers binding to M-type 11 of Streptococcus pyogenes.
Hamula CL; Peng H; Wang Z; Tyrrell GJ; Li XF; Le XC
Methods; 2016 Mar; 97():51-7. PubMed ID: 26678795
[TBL] [Abstract][Full Text] [Related]
19. Combining SELEX and the yeast three-hybrid system for in vivo selection and classification of RNA aptamers.
König J; Julius C; Baumann S; Homann M; Göringer HU; Feldbrügge M
RNA; 2007 Apr; 13(4):614-22. PubMed ID: 17283213
[TBL] [Abstract][Full Text] [Related]
20. More DNA-Aptamers for Small Drugs: A Capture-SELEX Coupled with Surface Plasmon Resonance and High-Throughput Sequencing.
Spiga FM; Maietta P; Guiducci C
ACS Comb Sci; 2015 May; 17(5):326-33. PubMed ID: 25875077
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]