BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

485 related articles for article (PubMed ID: 27467908)

  • 1. Analysis and Visualization Tool for Targeted Amplicon Bisulfite Sequencing on Ion Torrent Sequencers.
    Pabinger S; Ernst K; Pulverer W; Kallmeyer R; Valdes AM; Metrustry S; Katic D; Nuzzo A; Kriegner A; Vierlinger K; Weinhaeusel A
    PLoS One; 2016; 11(7):e0160227. PubMed ID: 27467908
    [TBL] [Abstract][Full Text] [Related]  

  • 2. DNA Methylation Profiling Using Long-Read Single Molecule Real-Time Bisulfite Sequencing (SMRT-BS).
    Yang Y; Scott SA
    Methods Mol Biol; 2017; 1654():125-134. PubMed ID: 28986786
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS).
    Yang Y; Sebra R; Pullman BS; Qiao W; Peter I; Desnick RJ; Geyer CR; DeCoteau JF; Scott SA
    BMC Genomics; 2015 May; 16(1):350. PubMed ID: 25943404
    [TBL] [Abstract][Full Text] [Related]  

  • 4. ampliMethProfiler: a pipeline for the analysis of CpG methylation profiles of targeted deep bisulfite sequenced amplicons.
    Scala G; Affinito O; Palumbo D; Florio E; Monticelli A; Miele G; Chiariotti L; Cocozza S
    BMC Bioinformatics; 2016 Nov; 17(1):484. PubMed ID: 27884103
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BisAMP: A web-based pipeline for targeted RNA cytosine-5 methylation analysis.
    Bormann F; Tuorto F; Cirzi C; Lyko F; Legrand C
    Methods; 2019 Mar; 156():121-127. PubMed ID: 30366099
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Locus-Specific DNA Methylation Analysis by Targeted Deep Bisulfite Sequencing.
    Leitão E; Beygo J; Zeschnigk M; Klein-Hitpass L; Bargull M; Rahmann S; Horsthemke B
    Methods Mol Biol; 2018; 1767():351-366. PubMed ID: 29524145
    [TBL] [Abstract][Full Text] [Related]  

  • 7. EPIC-TABSAT: analysis tool for targeted bisulfite sequencing experiments and array-based methylation studies.
    Krainer J; Weinhäusel A; Hanak K; Pulverer W; Özen S; Vierlinger K; Pabinger S
    Nucleic Acids Res; 2019 Jul; 47(W1):W166-W170. PubMed ID: 31106358
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.
    Hu K; Ting AH; Li J
    BMC Bioinformatics; 2015 Jul; 16():220. PubMed ID: 26163275
    [TBL] [Abstract][Full Text] [Related]  

  • 9. DNA Methylation Analysis by Bisulfite Conversion Coupled to Double Multiplexed Amplicon-Based Next-Generation Sequencing (NGS).
    Bashtrykov P; Jeltsch A
    Methods Mol Biol; 2018; 1767():367-382. PubMed ID: 29524146
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Preparation of genome-wide DNA fragment libraries using bisulfite in polyacrylamide gel electrophoresis slices with formamide denaturation and quality control for massively parallel sequencing by oligonucleotide ligation and detection.
    Ranade SS; Chung CB; Zon G; Boyd VL
    Anal Biochem; 2009 Jul; 390(2):126-35. PubMed ID: 19379703
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A systematic study of normalization methods for Infinium 450K methylation data using whole-genome bisulfite sequencing data.
    Wang T; Guan W; Lin J; Boutaoui N; Canino G; Luo J; Celedón JC; Chen W
    Epigenetics; 2015; 10(7):662-9. PubMed ID: 26036609
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Limitations and advantages of MS-HRM and bisulfite sequencing for single locus methylation studies.
    Wojdacz TK; Møller TH; Thestrup BB; Kristensen LS; Hansen LL
    Expert Rev Mol Diagn; 2010 Jul; 10(5):575-80. PubMed ID: 20629507
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MethyQA: a pipeline for bisulfite-treated methylation sequencing quality assessment.
    Sun S; Noviski A; Yu X
    BMC Bioinformatics; 2013 Aug; 14():259. PubMed ID: 23968174
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BiQ Analyzer: visualization and quality control for DNA methylation data from bisulfite sequencing.
    Bock C; Reither S; Mikeska T; Paulsen M; Walter J; Lengauer T
    Bioinformatics; 2005 Nov; 21(21):4067-8. PubMed ID: 16141249
    [TBL] [Abstract][Full Text] [Related]  

  • 15. AKSmooth: enhancing low-coverage bisulfite sequencing data via kernel-based smoothing.
    Chen J; Lutsik P; Akulenko R; Walter J; Helms V
    J Bioinform Comput Biol; 2014 Dec; 12(6):1442005. PubMed ID: 25553811
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bisulfite Patch PCR enables multiplexed sequencing of promoter methylation across cancer samples.
    Varley KE; Mitra RD
    Genome Res; 2010 Sep; 20(9):1279-87. PubMed ID: 20627893
    [TBL] [Abstract][Full Text] [Related]  

  • 17. MethyMer: Design of combinations of specific primers for bisulfite sequencing of complete CpG islands.
    Krasnov GS; Melnikova NV; Lakunina VA; Snezhkina AV; Kudryavtseva AV; Dmitriev AA
    J Bioinform Comput Biol; 2018 Feb; 16(1):1840004. PubMed ID: 29382254
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Detection of Differential DNA Methylation Under Stress Conditions Using Bisulfite Sequence Analysis.
    Al Harrasi I; Al-Yahyai R; Yaish MW
    Methods Mol Biol; 2017; 1631():121-137. PubMed ID: 28735394
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing.
    Taylor KH; Kramer RS; Davis JW; Guo J; Duff DJ; Xu D; Caldwell CW; Shi H
    Cancer Res; 2007 Sep; 67(18):8511-8. PubMed ID: 17875690
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MethGo: a comprehensive tool for analyzing whole-genome bisulfite sequencing data.
    Liao WW; Yen MR; Ju E; Hsu FM; Lam L; Chen PY
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S11. PubMed ID: 26680022
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 25.