These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

452 related articles for article (PubMed ID: 27473172)

  • 1. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
    Cao Y; Wang Y; Zheng X; Li F; Bo X
    BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.
    Levy R; Carr R; Kreimer A; Freilich S; Borenstein E
    BMC Bioinformatics; 2015 May; 16(1):164. PubMed ID: 25980407
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.
    Piccolo BD; Wankhade UD; Chintapalli SV; Bhattacharyya S; Chunqiao L; Shankar K
    Bioinformatics; 2018 Mar; 34(6):1050-1052. PubMed ID: 29087435
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles.
    Shaw GT; Pao YY; Wang D
    BMC Bioinformatics; 2016 Nov; 17(1):488. PubMed ID: 27887570
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.
    Carr R; Borenstein E
    Bioinformatics; 2012 Mar; 28(5):734-5. PubMed ID: 22219204
    [TBL] [Abstract][Full Text] [Related]  

  • 6. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
    Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K
    BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Picante: R tools for integrating phylogenies and ecology.
    Kembel SW; Cowan PD; Helmus MR; Cornwell WK; Morlon H; Ackerly DD; Blomberg SP; Webb CO
    Bioinformatics; 2010 Jun; 26(11):1463-4. PubMed ID: 20395285
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Community-analyzer: a platform for visualizing and comparing microbial community structure across microbiomes.
    Kuntal BK; Ghosh TS; Mande SS
    Genomics; 2013 Oct; 102(4):409-18. PubMed ID: 23978768
    [TBL] [Abstract][Full Text] [Related]  

  • 9. microeco: an R package for data mining in microbial community ecology.
    Liu C; Cui Y; Li X; Yao M
    FEMS Microbiol Ecol; 2021 Jan; 97(2):. PubMed ID: 33332530
    [TBL] [Abstract][Full Text] [Related]  

  • 10. animalcules: interactive microbiome analytics and visualization in R.
    Zhao Y; Federico A; Faits T; Manimaran S; Segrè D; Monti S; Johnson WE
    Microbiome; 2021 Mar; 9(1):76. PubMed ID: 33775256
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
    Broeksema B; Calusinska M; McGee F; Winter K; Bongiovanni F; Goux X; Wilmes P; Delfosse P; Ghoniem M
    BMC Bioinformatics; 2017 May; 18(1):233. PubMed ID: 28464793
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Community Simulator: A Python package for microbial ecology.
    Marsland R; Cui W; Goldford J; Mehta P
    PLoS One; 2020; 15(3):e0230430. PubMed ID: 32208436
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MetaTopics: an integration tool to analyze microbial community profile by topic model.
    Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
    BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chordomics: a visualization tool for linking function to phylogeny in microbiomes.
    McDonnell K; Waters N; Howley E; Abram F
    Bioinformatics; 2020 Feb; 36(4):1309-1310. PubMed ID: 31539022
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.
    McMurdie PJ; Holmes S
    Bioinformatics; 2015 Jan; 31(2):282-3. PubMed ID: 25262154
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SYNCSA--R tool for analysis of metacommunities based on functional traits and phylogeny of the community components.
    Debastiani VJ; Pillar VD
    Bioinformatics; 2012 Aug; 28(15):2067-8. PubMed ID: 22668789
    [TBL] [Abstract][Full Text] [Related]  

  • 17. iDINGO-integrative differential network analysis in genomics with Shiny application.
    Class CA; Ha MJ; Baladandayuthapani V; Do KA
    Bioinformatics; 2018 Apr; 34(7):1243-1245. PubMed ID: 29194470
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Spathial: an R package for the evolutionary analysis of biological data.
    Gardini E; Giorgi FM; Decherchi S; Cavalli A
    Bioinformatics; 2020 Nov; 36(17):4664-4667. PubMed ID: 32437522
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Constructing and Analyzing Microbiome Networks in R.
    Layeghifard M; Hwang DM; Guttman DS
    Methods Mol Biol; 2018; 1849():243-266. PubMed ID: 30298259
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome-metabolome data.
    Noecker C; Eng A; Muller E; Borenstein E
    Bioinformatics; 2022 Mar; 38(6):1615-1623. PubMed ID: 34999748
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.