BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

451 related articles for article (PubMed ID: 27473172)

  • 1. RevEcoR: an R package for the reverse ecology analysis of microbiomes.
    Cao Y; Wang Y; Zheng X; Li F; Bo X
    BMC Bioinformatics; 2016 Jul; 17(1):294. PubMed ID: 27473172
    [TBL] [Abstract][Full Text] [Related]  

  • 2. NetCooperate: a network-based tool for inferring host-microbe and microbe-microbe cooperation.
    Levy R; Carr R; Kreimer A; Freilich S; Borenstein E
    BMC Bioinformatics; 2015 May; 16(1):164. PubMed ID: 25980407
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data.
    Piccolo BD; Wankhade UD; Chintapalli SV; Bhattacharyya S; Chunqiao L; Shankar K
    Bioinformatics; 2018 Mar; 34(6):1050-1052. PubMed ID: 29087435
    [TBL] [Abstract][Full Text] [Related]  

  • 4. MetaMIS: a metagenomic microbial interaction simulator based on microbial community profiles.
    Shaw GT; Pao YY; Wang D
    BMC Bioinformatics; 2016 Nov; 17(1):488. PubMed ID: 27887570
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NetSeed: a network-based reverse-ecology tool for calculating the metabolic interface of an organism with its environment.
    Carr R; Borenstein E
    Bioinformatics; 2012 Mar; 28(5):734-5. PubMed ID: 22219204
    [TBL] [Abstract][Full Text] [Related]  

  • 6. wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool.
    Gysi DM; Voigt A; Fragoso TM; Almaas E; Nowick K
    BMC Bioinformatics; 2018 Oct; 19(1):392. PubMed ID: 30355288
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Picante: R tools for integrating phylogenies and ecology.
    Kembel SW; Cowan PD; Helmus MR; Cornwell WK; Morlon H; Ackerly DD; Blomberg SP; Webb CO
    Bioinformatics; 2010 Jun; 26(11):1463-4. PubMed ID: 20395285
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Community-analyzer: a platform for visualizing and comparing microbial community structure across microbiomes.
    Kuntal BK; Ghosh TS; Mande SS
    Genomics; 2013 Oct; 102(4):409-18. PubMed ID: 23978768
    [TBL] [Abstract][Full Text] [Related]  

  • 9. microeco: an R package for data mining in microbial community ecology.
    Liu C; Cui Y; Li X; Yao M
    FEMS Microbiol Ecol; 2021 Jan; 97(2):. PubMed ID: 33332530
    [TBL] [Abstract][Full Text] [Related]  

  • 10. animalcules: interactive microbiome analytics and visualization in R.
    Zhao Y; Federico A; Faits T; Manimaran S; Segrè D; Monti S; Johnson WE
    Microbiome; 2021 Mar; 9(1):76. PubMed ID: 33775256
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ICoVeR - an interactive visualization tool for verification and refinement of metagenomic bins.
    Broeksema B; Calusinska M; McGee F; Winter K; Bongiovanni F; Goux X; Wilmes P; Delfosse P; Ghoniem M
    BMC Bioinformatics; 2017 May; 18(1):233. PubMed ID: 28464793
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The Community Simulator: A Python package for microbial ecology.
    Marsland R; Cui W; Goldford J; Mehta P
    PLoS One; 2020; 15(3):e0230430. PubMed ID: 32208436
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MetaTopics: an integration tool to analyze microbial community profile by topic model.
    Yan J; Chuai G; Qi T; Shao F; Zhou C; Zhu C; Yang J; Yu Y; Shi C; Kang N; He Y; Liu Q
    BMC Genomics; 2017 Jan; 18(Suppl 1):962. PubMed ID: 28198670
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Chordomics: a visualization tool for linking function to phylogeny in microbiomes.
    McDonnell K; Waters N; Howley E; Abram F
    Bioinformatics; 2020 Feb; 36(4):1309-1310. PubMed ID: 31539022
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.
    McMurdie PJ; Holmes S
    Bioinformatics; 2015 Jan; 31(2):282-3. PubMed ID: 25262154
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Molecular ecological network analyses.
    Deng Y; Jiang YH; Yang Y; He Z; Luo F; Zhou J
    BMC Bioinformatics; 2012 May; 13():113. PubMed ID: 22646978
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SYNCSA--R tool for analysis of metacommunities based on functional traits and phylogeny of the community components.
    Debastiani VJ; Pillar VD
    Bioinformatics; 2012 Aug; 28(15):2067-8. PubMed ID: 22668789
    [TBL] [Abstract][Full Text] [Related]  

  • 18. iDINGO-integrative differential network analysis in genomics with Shiny application.
    Class CA; Ha MJ; Baladandayuthapani V; Do KA
    Bioinformatics; 2018 Apr; 34(7):1243-1245. PubMed ID: 29194470
    [TBL] [Abstract][Full Text] [Related]  

  • 19. MIMOSA2: a metabolic network-based tool for inferring mechanism-supported relationships in microbiome-metabolome data.
    Noecker C; Eng A; Muller E; Borenstein E
    Bioinformatics; 2022 Mar; 38(6):1615-1623. PubMed ID: 34999748
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Spathial: an R package for the evolutionary analysis of biological data.
    Gardini E; Giorgi FM; Decherchi S; Cavalli A
    Bioinformatics; 2020 Nov; 36(17):4664-4667. PubMed ID: 32437522
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 23.