BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

138 related articles for article (PubMed ID: 27497441)

  • 21. Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.
    Sundfeld D; Havgaard JH; de Melo AC; Gorodkin J
    Bioinformatics; 2016 Apr; 32(8):1238-40. PubMed ID: 26704597
    [TBL] [Abstract][Full Text] [Related]  

  • 22. RNAseqViewer: visualization tool for RNA-Seq data.
    Rogé X; Zhang X
    Bioinformatics; 2014 Mar; 30(6):891-2. PubMed ID: 24215023
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Normalization and noise reduction for single cell RNA-seq experiments.
    Ding B; Zheng L; Zhu Y; Li N; Jia H; Ai R; Wildberg A; Wang W
    Bioinformatics; 2015 Jul; 31(13):2225-7. PubMed ID: 25717193
    [TBL] [Abstract][Full Text] [Related]  

  • 24. RNAdt: An online tutorial and data portal for the RNA structurome era.
    Zhou N; Bao J
    Biosystems; 2020 Mar; 189():104065. PubMed ID: 31669269
    [TBL] [Abstract][Full Text] [Related]  

  • 25. iFoldRNA v2: folding RNA with constraints.
    Krokhotin A; Houlihan K; Dokholyan NV
    Bioinformatics; 2015 Sep; 31(17):2891-3. PubMed ID: 25910700
    [TBL] [Abstract][Full Text] [Related]  

  • 26. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
    Shi Y; Chinnaiyan AM; Jiang H
    Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
    [TBL] [Abstract][Full Text] [Related]  

  • 27. The evolution of RNA structural probing methods: From gels to next-generation sequencing.
    Mailler E; Paillart JC; Marquet R; Smyth RP; Vivet-Boudou V
    Wiley Interdiscip Rev RNA; 2019 Mar; 10(2):e1518. PubMed ID: 30485688
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Primerize-2D: automated primer design for RNA multidimensional chemical mapping.
    Tian S; Das R
    Bioinformatics; 2017 May; 33(9):1405-1406. PubMed ID: 28453672
    [TBL] [Abstract][Full Text] [Related]  

  • 29. smallWig: parallel compression of RNA-seq WIG files.
    Wang Z; Weissman T; Milenkovic O
    Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
    [TBL] [Abstract][Full Text] [Related]  

  • 30. RNAthor - fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis.
    Gumna J; Zok T; Figurski K; Pachulska-Wieczorek K; Szachniuk M
    PLoS One; 2020; 15(10):e0239287. PubMed ID: 33002005
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Dawn of the in vivo RNA structurome and interactome.
    Kwok CK
    Biochem Soc Trans; 2016 Oct; 44(5):1395-1410. PubMed ID: 27911722
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Analysis of High-Throughput RNA Bisulfite Sequencing Data.
    Rieder D; Finotello F
    Methods Mol Biol; 2017; 1562():143-154. PubMed ID: 28349459
    [TBL] [Abstract][Full Text] [Related]  

  • 33. CPSS: a computational platform for the analysis of small RNA deep sequencing data.
    Zhang Y; Xu B; Yang Y; Ban R; Zhang H; Jiang X; Cooke HJ; Xue Y; Shi Q
    Bioinformatics; 2012 Jul; 28(14):1925-7. PubMed ID: 22576177
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Quality control of RNA-seq experiments.
    Li X; Nair A; Wang S; Wang L
    Methods Mol Biol; 2015; 1269():137-46. PubMed ID: 25577376
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer.
    Mose LE; Selitsky SR; Bixby LM; Marron DL; Iglesia MD; Serody JS; Perou CM; Vincent BG; Parker JS
    Bioinformatics; 2016 Dec; 32(24):3729-3734. PubMed ID: 27559159
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Transcriptomic Analysis of C. elegans RNA Sequencing Data Through the Tuxedo Suite on the Galaxy Project.
    Amrit FRG; Ghazi A
    J Vis Exp; 2017 Apr; (122):. PubMed ID: 28448031
    [TBL] [Abstract][Full Text] [Related]  

  • 38. MTide: an integrated tool for the identification of miRNA-target interaction in plants.
    Zhang Z; Jiang L; Wang J; Gu P; Chen M
    Bioinformatics; 2015 Jan; 31(2):290-1. PubMed ID: 25256573
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Efficient RNA pairwise structure comparison by SETTER method.
    Hoksza D; Svozil D
    Bioinformatics; 2012 Jul; 28(14):1858-64. PubMed ID: 22611129
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Genome-Wide Probing of RNA Structures In Vitro Using Nucleases and Deep Sequencing.
    Wan Y; Qu K; Ouyang Z; Chang HY
    Methods Mol Biol; 2016; 1361():141-60. PubMed ID: 26483021
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.