These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

350 related articles for article (PubMed ID: 27497444)

  • 61. CellPublisher: a web platform for the intuitive visualization and sharing of metabolic, signalling and regulatory pathways.
    Flórez LA; Lammers CR; Michna R; Stülke J
    Bioinformatics; 2010 Dec; 26(23):2997-9. PubMed ID: 20947526
    [TBL] [Abstract][Full Text] [Related]  

  • 62. The emergent neural modeling system.
    Aisa B; Mingus B; O'Reilly R
    Neural Netw; 2008 Oct; 21(8):1146-52. PubMed ID: 18684591
    [TBL] [Abstract][Full Text] [Related]  

  • 63. Chemical effects in biological systems (CEBS) object model for toxicology data, SysTox-OM: design and application.
    Xirasagar S; Gustafson SF; Huang CC; Pan Q; Fostel J; Boyer P; Merrick BA; Tomer KB; Chan DD; Yost KJ; Choi D; Xiao N; Stasiewicz S; Bushel P; Waters MD
    Bioinformatics; 2006 Apr; 22(7):874-82. PubMed ID: 16410321
    [TBL] [Abstract][Full Text] [Related]  

  • 64. Virtual Cell: computational tools for modeling in cell biology.
    Resasco DC; Gao F; Morgan F; Novak IL; Schaff JC; Slepchenko BM
    Wiley Interdiscip Rev Syst Biol Med; 2012; 4(2):129-40. PubMed ID: 22139996
    [TBL] [Abstract][Full Text] [Related]  

  • 65. SED-ML web tools: generate, modify and export standard-compliant simulation studies.
    Bergmann FT; Nickerson D; Waltemath D; Scharm M
    Bioinformatics; 2017 Apr; 33(8):1253-1254. PubMed ID: 28049131
    [TBL] [Abstract][Full Text] [Related]  

  • 66. Spatial and stochastic cellular modeling with the Smoldyn simulator.
    Andrews SS
    Methods Mol Biol; 2012; 804():519-42. PubMed ID: 22144170
    [TBL] [Abstract][Full Text] [Related]  

  • 67. ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology.
    Bittig AT; Uhrmacher AM
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(6):1339-1349. PubMed ID: 27514063
    [TBL] [Abstract][Full Text] [Related]  

  • 68. Programming biological models in Python using PySB.
    Lopez CF; Muhlich JL; Bachman JA; Sorger PK
    Mol Syst Biol; 2013; 9():646. PubMed ID: 23423320
    [TBL] [Abstract][Full Text] [Related]  

  • 69. Multi-Level Modeling and Simulation of Cellular Systems: An Introduction to ML-Rules.
    Helms T; Warnke T; Uhrmacher AM
    Methods Mol Biol; 2019; 1945():141-160. PubMed ID: 30945245
    [TBL] [Abstract][Full Text] [Related]  

  • 70. Parameter estimation using Simulated Annealing for S-system models of biochemical networks.
    Gonzalez OR; Küper C; Jung K; Naval PC; Mendoza E
    Bioinformatics; 2007 Feb; 23(4):480-6. PubMed ID: 17038344
    [TBL] [Abstract][Full Text] [Related]  

  • 71. MCell4 with BioNetGen: A Monte Carlo simulator of rule-based reaction-diffusion systems with Python interface.
    Husar A; Ordyan M; Garcia GC; Yancey JG; Saglam AS; Faeder JR; Bartol TM; Kennedy MB; Sejnowski TJ
    PLoS Comput Biol; 2024 Apr; 20(4):e1011800. PubMed ID: 38656994
    [TBL] [Abstract][Full Text] [Related]  

  • 72. JCell--a Java-based framework for inferring regulatory networks from time series data.
    Spieth C; Supper J; Streichert F; Speer N; Zell A
    Bioinformatics; 2006 Aug; 22(16):2051-2. PubMed ID: 16782725
    [TBL] [Abstract][Full Text] [Related]  

  • 73. The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Machné R; Finney A; Müller S; Lu J; Widder S; Flamm C
    Bioinformatics; 2006 Jun; 22(11):1406-7. PubMed ID: 16527832
    [TBL] [Abstract][Full Text] [Related]  

  • 74. Simulated single molecule microscopy with SMeagol.
    Lindén M; Ćurić V; Boucharin A; Fange D; Elf J
    Bioinformatics; 2016 Aug; 32(15):2394-5. PubMed ID: 27153711
    [TBL] [Abstract][Full Text] [Related]  

  • 75. Artistoo, a library to build, share, and explore simulations of cells and tissues in the web browser.
    Wortel IM; Textor J
    Elife; 2021 Apr; 10():. PubMed ID: 33835022
    [TBL] [Abstract][Full Text] [Related]  

  • 76. OBIYagns: a grid-based biochemical simulator with a parameter estimator.
    Kimura S; Kawasaki T; Hatakeyama M; Naka T; Konishi F; Konagaya A
    Bioinformatics; 2004 Jul; 20(10):1646-8. PubMed ID: 14962919
    [TBL] [Abstract][Full Text] [Related]  

  • 77. SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networks.
    Gevorgyan A; Bushell ME; Avignone-Rossa C; Kierzek AM
    Bioinformatics; 2011 Feb; 27(3):433-4. PubMed ID: 21148545
    [TBL] [Abstract][Full Text] [Related]  

  • 78. Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.
    Bonnal RJ; Aerts J; Githinji G; Goto N; MacLean D; Miller CA; Mishima H; Pagani M; Ramirez-Gonzalez R; Smant G; Strozzi F; Syme R; Vos R; Wennblom TJ; Woodcroft BJ; Katayama T; Prins P
    Bioinformatics; 2012 Apr; 28(7):1035-7. PubMed ID: 22332238
    [TBL] [Abstract][Full Text] [Related]  

  • 79. Modeling biological systems using Dynetica--a simulator of dynamic networks.
    You L; Hoonlor A; Yin J
    Bioinformatics; 2003 Feb; 19(3):435-6. PubMed ID: 12584138
    [TBL] [Abstract][Full Text] [Related]  

  • 80. E-CELL: software environment for whole-cell simulation.
    Tomita M; Hashimoto K; Takahashi K; Shimizu TS; Matsuzaki Y; Miyoshi F; Saito K; Tanida S; Yugi K; Venter JC; Hutchison CA
    Bioinformatics; 1999 Jan; 15(1):72-84. PubMed ID: 10068694
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 18.