117 related articles for article (PubMed ID: 27498768)
1. N-Terminal Peptide Detection with Optimized Peptide-Spectrum Matching and Streamlined Sequence Libraries.
Lycette BE; Glickman JW; Roth SJ; Cram AE; Kim TH; Krizanc D; Weir MP
J Proteome Res; 2016 Sep; 15(9):2891-9. PubMed ID: 27498768
[TBL] [Abstract][Full Text] [Related]
2. Amino termini of many yeast proteins map to downstream start codons.
Fournier CT; Cherny JJ; Truncali K; Robbins-Pianka A; Lin MS; Krizanc D; Weir MP
J Proteome Res; 2012 Dec; 11(12):5712-9. PubMed ID: 23140384
[TBL] [Abstract][Full Text] [Related]
3. Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.
Wright JC; Collins MO; Yu L; Käll L; Brosch M; Choudhary JS
Mol Cell Proteomics; 2012 Aug; 11(8):478-91. PubMed ID: 22493177
[TBL] [Abstract][Full Text] [Related]
4. Bioinformatics analysis of a Saccharomyces cerevisiae N-terminal proteome provides evidence of alternative translation initiation and post-translational N-terminal acetylation.
Helsens K; Van Damme P; Degroeve S; Martens L; Arnesen T; Vandekerckhove J; Gevaert K
J Proteome Res; 2011 Aug; 10(8):3578-89. PubMed ID: 21619078
[TBL] [Abstract][Full Text] [Related]
5. N-terminal proteomics and ribosome profiling provide a comprehensive view of the alternative translation initiation landscape in mice and men.
Van Damme P; Gawron D; Van Criekinge W; Menschaert G
Mol Cell Proteomics; 2014 May; 13(5):1245-61. PubMed ID: 24623590
[TBL] [Abstract][Full Text] [Related]
6. The problem with peptide presumption and low Mascot scoring.
Cooper B
J Proteome Res; 2011 Mar; 10(3):1432-5. PubMed ID: 21229988
[TBL] [Abstract][Full Text] [Related]
7. Peptide identification from mixture tandem mass spectra.
Wang J; Pérez-Santiago J; Katz JE; Mallick P; Bandeira N
Mol Cell Proteomics; 2010 Jul; 9(7):1476-85. PubMed ID: 20348588
[TBL] [Abstract][Full Text] [Related]
8. Using annotated peptide mass spectrum libraries for protein identification.
Craig R; Cortens JC; Fenyo D; Beavis RC
J Proteome Res; 2006 Aug; 5(8):1843-9. PubMed ID: 16889405
[TBL] [Abstract][Full Text] [Related]
9. Deep proteome coverage based on ribosome profiling aids mass spectrometry-based protein and peptide discovery and provides evidence of alternative translation products and near-cognate translation initiation events.
Menschaert G; Van Criekinge W; Notelaers T; Koch A; Crappé J; Gevaert K; Van Damme P
Mol Cell Proteomics; 2013 Jul; 12(7):1780-90. PubMed ID: 23429522
[TBL] [Abstract][Full Text] [Related]
10. Proteomics-based refinement of Deinococcus deserti genome annotation reveals an unwonted use of non-canonical translation initiation codons.
Baudet M; Ortet P; Gaillard JC; Fernandez B; Guérin P; Enjalbal C; Subra G; de Groot A; Barakat M; Dedieu A; Armengaud J
Mol Cell Proteomics; 2010 Feb; 9(2):415-26. PubMed ID: 19875382
[TBL] [Abstract][Full Text] [Related]
11. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
Zhang DL; Ji L; Li YD
Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
[TBL] [Abstract][Full Text] [Related]
12. Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.
Fermin D; Allen BB; Blackwell TW; Menon R; Adamski M; Xu Y; Ulintz P; Omenn GS; States DJ
Genome Biol; 2006; 7(4):R35. PubMed ID: 16646984
[TBL] [Abstract][Full Text] [Related]
13. Selection of Collision Energies in Proteomics Mass Spectrometry Experiments for Best Peptide Identification: Study of Mascot Score Energy Dependence Reveals Double Optimum.
Révész Á; Rokob TA; Jeanne Dit Fouque D; Turiák L; Memboeuf A; Vékey K; Drahos L
J Proteome Res; 2018 May; 17(5):1898-1906. PubMed ID: 29607649
[TBL] [Abstract][Full Text] [Related]
14. Combination of Multiple Spectral Libraries Improves the Current Search Methods Used to Identify Missing Proteins in the Chromosome-Centric Human Proteome Project.
Cho JY; Lee HJ; Jeong SK; Kim KY; Kwon KH; Yoo JS; Omenn GS; Baker MS; Hancock WS; Paik YK
J Proteome Res; 2015 Dec; 14(12):4959-66. PubMed ID: 26330117
[TBL] [Abstract][Full Text] [Related]
15. Ac-LysargiNase efficiently helps genome reannotation of Mycolicibacterium smegmatis MC
Zhu H; Jiang S; Zhou W; Chi H; Sun J; Shi J; Zhang Z; Chang L; Yu L; Zhang L; Lyu Z; Xu P; Zhang Y
J Proteomics; 2022 Jul; 264():104622. PubMed ID: 35598869
[TBL] [Abstract][Full Text] [Related]
16. MassWiz: a novel scoring algorithm with target-decoy based analysis pipeline for tandem mass spectrometry.
Yadav AK; Kumar D; Dash D
J Proteome Res; 2011 May; 10(5):2154-60. PubMed ID: 21417338
[TBL] [Abstract][Full Text] [Related]
17. Lack of correlation between Sendai virus P/C mRNA structure and its utilization of two AUG start sites from alternate reading frames: implications for viral bicistronic mRNAs.
Gupta KC; Ono E; Xu X
Biochemistry; 1996 Jan; 35(4):1223-31. PubMed ID: 8573577
[TBL] [Abstract][Full Text] [Related]
18. Evaluation of several MS/MS search algorithms for analysis of spectra derived from electron transfer dissociation experiments.
Kandasamy K; Pandey A; Molina H
Anal Chem; 2009 Sep; 81(17):7170-80. PubMed ID: 19639959
[TBL] [Abstract][Full Text] [Related]
19. Translation of the F protein of hepatitis C virus is initiated at a non-AUG codon in a +1 reading frame relative to the polyprotein.
Baril M; Brakier-Gingras L
Nucleic Acids Res; 2005; 33(5):1474-86. PubMed ID: 15755749
[TBL] [Abstract][Full Text] [Related]
20. Presentation of out-of-frame peptide/MHC class I complexes by a novel translation initiation mechanism.
Malarkannan S; Horng T; Shih PP; Schwab S; Shastri N
Immunity; 1999 Jun; 10(6):681-90. PubMed ID: 10403643
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]