155 related articles for article (PubMed ID: 27503224)
1. PathScore: a web tool for identifying altered pathways in cancer data.
Gaffney SG; Townsend JP
Bioinformatics; 2016 Dec; 32(23):3688-3690. PubMed ID: 27503224
[TBL] [Abstract][Full Text] [Related]
2. MyBioNet: interactively visualize, edit and merge biological networks on the web.
Huang D; Huang Y; Bai Y; Chen D; Hofestädt R; Klukas C; Chen M
Bioinformatics; 2011 Dec; 27(23):3321-2. PubMed ID: 21984760
[TBL] [Abstract][Full Text] [Related]
3. BioPAXViz: a cytoscape application for the visual exploration of metabolic pathway evolution.
Psomopoulos FE; Vitsios DM; Baichoo S; Ouzounis CA
Bioinformatics; 2017 May; 33(9):1418-1420. PubMed ID: 28453679
[TBL] [Abstract][Full Text] [Related]
4. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
[TBL] [Abstract][Full Text] [Related]
5. AlgoRun: a Docker-based packaging system for platform-agnostic implemented algorithms.
Hosny A; Vera-Licona P; Laubenbacher R; Favre T
Bioinformatics; 2016 Aug; 32(15):2396-8. PubMed ID: 27153722
[TBL] [Abstract][Full Text] [Related]
6. PhDSeeker: Pheromone-Directed Seeker for metabolic pathways.
Gerard MF; Comelli RN
Biosystems; 2020 Dec; 198():104259. PubMed ID: 32976925
[TBL] [Abstract][Full Text] [Related]
7. PyBEL: a computational framework for Biological Expression Language.
Hoyt CT; Konotopez A; Ebeling C; Wren J
Bioinformatics; 2018 Feb; 34(4):703-704. PubMed ID: 29048466
[TBL] [Abstract][Full Text] [Related]
8. Dugong: a Docker image, based on Ubuntu Linux, focused on reproducibility and replicability for bioinformatics analyses.
Menegidio FB; Jabes DL; Costa de Oliveira R; Nunes LR
Bioinformatics; 2018 Feb; 34(3):514-515. PubMed ID: 28968637
[TBL] [Abstract][Full Text] [Related]
9. Phylesystem: a git-based data store for community-curated phylogenetic estimates.
McTavish EJ; Hinchliff CE; Allman JF; Brown JW; Cranston KA; Holder MT; Rees JA; Smith SA
Bioinformatics; 2015 Sep; 31(17):2794-800. PubMed ID: 25940563
[TBL] [Abstract][Full Text] [Related]
10. Reactome diagram viewer: data structures and strategies to boost performance.
Fabregat A; Sidiropoulos K; Viteri G; Marin-Garcia P; Ping P; Stein L; D'Eustachio P; Hermjakob H
Bioinformatics; 2018 Apr; 34(7):1208-1214. PubMed ID: 29186351
[TBL] [Abstract][Full Text] [Related]
11. An active registry for bioinformatics web services.
Pettifer S; Thorne D; McDermott P; Attwood T; Baran J; Bryne JC; Hupponen T; Mowbray D; Vriend G
Bioinformatics; 2009 Aug; 25(16):2090-1. PubMed ID: 19460889
[TBL] [Abstract][Full Text] [Related]
12. PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data.
Bahceci I; Dogrusoz U; La KC; Babur Ö; Gao J; Schultz N
Bioinformatics; 2017 Jul; 33(14):2238-2240. PubMed ID: 28334343
[TBL] [Abstract][Full Text] [Related]
13. PathRings: a web-based tool for exploration of ortholog and expression data in biological pathways.
Zhu Y; Sun L; Garbarino A; Schmidt C; Fang J; Chen J
BMC Bioinformatics; 2015 May; 16(1):165. PubMed ID: 25982732
[TBL] [Abstract][Full Text] [Related]
14. MOST: a software environment for constraint-based metabolic modeling and strain design.
Kelley JJ; Lane A; Li X; Mutthoju B; Maor S; Egen D; Lun DS
Bioinformatics; 2015 Feb; 31(4):610-1. PubMed ID: 25677126
[TBL] [Abstract][Full Text] [Related]
15. miTRATA: a web-based tool for microRNA Truncation and Tailing Analysis.
Patel P; Ramachandruni SD; Kakrana A; Nakano M; Meyers BC
Bioinformatics; 2016 Feb; 32(3):450-2. PubMed ID: 26454275
[TBL] [Abstract][Full Text] [Related]
16. Gobe: an interactive, web-based tool for comparative genomic visualization.
Pedersen BS; Tang H; Freeling M
Bioinformatics; 2011 Apr; 27(7):1015-6. PubMed ID: 21296748
[TBL] [Abstract][Full Text] [Related]
17. MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.
Lee H; Lee M; Mohammed Ismail W; Rho M; Fox GC; Oh S; Tang H
Bioinformatics; 2016 Aug; 32(16):2502-4. PubMed ID: 27153595
[TBL] [Abstract][Full Text] [Related]
18. PySCeSToolbox: a collection of metabolic pathway analysis tools.
Christensen CD; Hofmeyr JS; Rohwer JM
Bioinformatics; 2018 Jan; 34(1):124-125. PubMed ID: 28968872
[TBL] [Abstract][Full Text] [Related]
19. KEGGconverter: a tool for the in-silico modelling of metabolic networks of the KEGG Pathways database.
Moutselos K; Kanaris I; Chatziioannou A; Maglogiannis I; Kolisis FN
BMC Bioinformatics; 2009 Oct; 10():324. PubMed ID: 19814801
[TBL] [Abstract][Full Text] [Related]
20. MAGNET: A web-based application for gene set enrichment analysis using macrophage data sets.
Chen SY; Gadhvi G; Winter DR
PLoS One; 2023; 18(1):e0272166. PubMed ID: 36630461
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]