272 related articles for article (PubMed ID: 27515742)
1. EnhancerAtlas: a resource for enhancer annotation and analysis in 105 human cell/tissue types.
Gao T; He B; Liu S; Zhu H; Tan K; Qian J
Bioinformatics; 2016 Dec; 32(23):3543-3551. PubMed ID: 27515742
[TBL] [Abstract][Full Text] [Related]
2. EnhancerAtlas 2.0: an updated resource with enhancer annotation in 586 tissue/cell types across nine species.
Gao T; Qian J
Nucleic Acids Res; 2020 Jan; 48(D1):D58-D64. PubMed ID: 31740966
[TBL] [Abstract][Full Text] [Related]
3. EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions.
Gao T; Qian J
PLoS Comput Biol; 2019 Oct; 15(10):e1007436. PubMed ID: 31665135
[TBL] [Abstract][Full Text] [Related]
4. scEnhancer: a single-cell enhancer resource with annotation across hundreds of tissue/cell types in three species.
Gao T; Zheng Z; Pan Y; Zhu C; Wei F; Yuan J; Sun R; Fang S; Wang N; Zhou Y; Qian J
Nucleic Acids Res; 2022 Jan; 50(D1):D371-D379. PubMed ID: 34761274
[TBL] [Abstract][Full Text] [Related]
5. iEnhancer-2L: a two-layer predictor for identifying enhancers and their strength by pseudo k-tuple nucleotide composition.
Liu B; Fang L; Long R; Lan X; Chou KC
Bioinformatics; 2016 Feb; 32(3):362-9. PubMed ID: 26476782
[TBL] [Abstract][Full Text] [Related]
6. GeneHancer: genome-wide integration of enhancers and target genes in GeneCards.
Fishilevich S; Nudel R; Rappaport N; Hadar R; Plaschkes I; Iny Stein T; Rosen N; Kohn A; Twik M; Safran M; Lancet D; Cohen D
Database (Oxford); 2017 Jan; 2017():. PubMed ID: 28605766
[TBL] [Abstract][Full Text] [Related]
7. VISTA Enhancer Browser--a database of tissue-specific human enhancers.
Visel A; Minovitsky S; Dubchak I; Pennacchio LA
Nucleic Acids Res; 2007 Jan; 35(Database issue):D88-92. PubMed ID: 17130149
[TBL] [Abstract][Full Text] [Related]
8. SEA: a super-enhancer archive.
Wei Y; Zhang S; Shang S; Zhang B; Li S; Wang X; Wang F; Su J; Wu Q; Liu H; Zhang Y
Nucleic Acids Res; 2016 Jan; 44(D1):D172-9. PubMed ID: 26578594
[TBL] [Abstract][Full Text] [Related]
9. SNiPA: an interactive, genetic variant-centered annotation browser.
Arnold M; Raffler J; Pfeufer A; Suhre K; Kastenmüller G
Bioinformatics; 2015 Apr; 31(8):1334-6. PubMed ID: 25431330
[TBL] [Abstract][Full Text] [Related]
10. Integrative machine learning framework for the identification of cell-specific enhancers from the human genome.
Basith S; Hasan MM; Lee G; Wei L; Manavalan B
Brief Bioinform; 2021 Nov; 22(6):. PubMed ID: 34226917
[TBL] [Abstract][Full Text] [Related]
11. dbSUPER: a database of super-enhancers in mouse and human genome.
Khan A; Zhang X
Nucleic Acids Res; 2016 Jan; 44(D1):D164-71. PubMed ID: 26438538
[TBL] [Abstract][Full Text] [Related]
12. Progress and challenges in bioinformatics approaches for enhancer identification.
Kleftogiannis D; Kalnis P; Bajic VB
Brief Bioinform; 2016 Nov; 17(6):967-979. PubMed ID: 26634919
[TBL] [Abstract][Full Text] [Related]
13. HEDD: Human Enhancer Disease Database.
Wang Z; Zhang Q; Zhang W; Lin JR; Cai Y; Mitra J; Zhang ZD
Nucleic Acids Res; 2018 Jan; 46(D1):D113-D120. PubMed ID: 29077884
[TBL] [Abstract][Full Text] [Related]
14. ENdb: a manually curated database of experimentally supported enhancers for human and mouse.
Bai X; Shi S; Ai B; Jiang Y; Liu Y; Han X; Xu M; Pan Q; Wang F; Wang Q; Zhang J; Li X; Feng C; Li Y; Wang Y; Song Y; Feng K; Li C
Nucleic Acids Res; 2020 Jan; 48(D1):D51-D57. PubMed ID: 31665430
[TBL] [Abstract][Full Text] [Related]
15. DiseaseEnhancer: a resource of human disease-associated enhancer catalog.
Zhang G; Shi J; Zhu S; Lan Y; Xu L; Yuan H; Liao G; Liu X; Zhang Y; Xiao Y; Li X
Nucleic Acids Res; 2018 Jan; 46(D1):D78-D84. PubMed ID: 29059320
[TBL] [Abstract][Full Text] [Related]
16. projectR: an R/Bioconductor package for transfer learning via PCA, NMF, correlation and clustering.
Sharma G; Colantuoni C; Goff LA; Fertig EJ; Stein-O'Brien G
Bioinformatics; 2020 Jun; 36(11):3592-3593. PubMed ID: 32167521
[TBL] [Abstract][Full Text] [Related]
17. EpiCompare: an online tool to define and explore genomic regions with tissue or cell type-specific epigenomic features.
He Y; Wang T
Bioinformatics; 2017 Oct; 33(20):3268-3275. PubMed ID: 28605501
[TBL] [Abstract][Full Text] [Related]
18. A comprehensive revisit of the machine-learning tools developed for the identification of enhancers in the human genome.
Phan LT; Oh C; He T; Manavalan B
Proteomics; 2023 Jul; 23(13-14):e2200409. PubMed ID: 37021401
[TBL] [Abstract][Full Text] [Related]
19. EnDisease: a manually curated database for enhancer-disease associations.
Zeng W; Min X; Jiang R
Database (Oxford); 2019 Jan; 2019():. PubMed ID: 30788500
[TBL] [Abstract][Full Text] [Related]
20. Information Resources for Functional Genomics Studies in Brachypodium distachyon.
Mochida K; Shinozaki K
Methods Mol Biol; 2018; 1667():87-99. PubMed ID: 29039006
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
