142 related articles for article (PubMed ID: 27522081)
1. Gene Slider: sequence logo interactive data-visualization for education and research.
Waese J; Pasha A; Wang TT; van Weringh A; Guttman DS; Provart NJ
Bioinformatics; 2016 Dec; 32(23):3670-3672. PubMed ID: 27522081
[TBL] [Abstract][Full Text] [Related]
2. Sequence homology in eukaryotes (SHOE): interactive visual tool for promoter analysis.
Polouliakh N; Horton P; Shibanai K; Takata K; Ludwig V; Ghosh S; Kitano H
BMC Genomics; 2018 Sep; 19(1):715. PubMed ID: 30261835
[TBL] [Abstract][Full Text] [Related]
3. DoOPSearch: a web-based tool for finding and analysing common conserved motifs in the promoter regions of different chordate and plant genes.
Sebestyén E; Nagy T; Suhai S; Barta E
BMC Bioinformatics; 2009 Jun; 10 Suppl 6(Suppl 6):S6. PubMed ID: 19534755
[TBL] [Abstract][Full Text] [Related]
4. NemaFootPrinter: a web based software for the identification of conserved non-coding genome sequence regions between C. elegans and C. briggsae.
Rambaldi D; Guffanti A; Morandi P; Cassata G
BMC Bioinformatics; 2005 Dec; 6 Suppl 4(Suppl 4):S22. PubMed ID: 16351749
[TBL] [Abstract][Full Text] [Related]
5. STAMP: a web tool for exploring DNA-binding motif similarities.
Mahony S; Benos PV
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W253-8. PubMed ID: 17478497
[TBL] [Abstract][Full Text] [Related]
6. CONREAL web server: identification and visualization of conserved transcription factor binding sites.
Berezikov E; Guryev V; Cuppen E
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W447-50. PubMed ID: 15980509
[TBL] [Abstract][Full Text] [Related]
7. TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets.
Dang LT; Tondl M; Chiu MHH; Revote J; Paten B; Tano V; Tokolyi A; Besse F; Quaife-Ryan G; Cumming H; Drvodelic MJ; Eichenlaub MP; Hallab JC; Stolper JS; Rossello FJ; Bogoyevitch MA; Jans DA; Nim HT; Porrello ER; Hudson JE; Ramialison M
BMC Genomics; 2018 Apr; 19(1):238. PubMed ID: 29621972
[TBL] [Abstract][Full Text] [Related]
8. MAPPER: a search engine for the computational identification of putative transcription factor binding sites in multiple genomes.
Marinescu VD; Kohane IS; Riva A
BMC Bioinformatics; 2005 Mar; 6():79. PubMed ID: 15799782
[TBL] [Abstract][Full Text] [Related]
9. Comparative promoter region analysis powered by CORG.
Dieterich C; Grossmann S; Tanzer A; Röpcke S; Arndt PF; Stadler PF; Vingron M
BMC Genomics; 2005 Feb; 6():24. PubMed ID: 15723697
[TBL] [Abstract][Full Text] [Related]
10. GATA: a graphic alignment tool for comparative sequence analysis.
Nix DA; Eisen MB
BMC Bioinformatics; 2005 Jan; 6():9. PubMed ID: 15655071
[TBL] [Abstract][Full Text] [Related]
11. The Innate Immune Database (IIDB).
Korb M; Rust AG; Thorsson V; Battail C; Li B; Hwang D; Kennedy KA; Roach JC; Rosenberger CM; Gilchrist M; Zak D; Johnson C; Marzolf B; Aderem A; Shmulevich I; Bolouri H
BMC Immunol; 2008 Mar; 9():7. PubMed ID: 18321385
[TBL] [Abstract][Full Text] [Related]
12. FIMO: scanning for occurrences of a given motif.
Grant CE; Bailey TL; Noble WS
Bioinformatics; 2011 Apr; 27(7):1017-8. PubMed ID: 21330290
[TBL] [Abstract][Full Text] [Related]
13. CircularLogo: A lightweight web application to visualize intra-motif dependencies.
Ye Z; Ma T; Kalmbach MT; Dasari S; Kocher JA; Wang L
BMC Bioinformatics; 2017 May; 18(1):269. PubMed ID: 28532394
[TBL] [Abstract][Full Text] [Related]
14. A search tool for identification and analysis of conserved sequence patterns in Saccharomyces spp. orthologous promoter.
Kohli DK; Srikanth CV; Bachhawat AK
In Silico Biol; 2004; 4(4):411-5. PubMed ID: 15506991
[TBL] [Abstract][Full Text] [Related]
15. LogoBar: bar graph visualization of protein logos with gaps.
Pérez-Bercoff A; Koch J; Bürglin TR
Bioinformatics; 2006 Jan; 22(1):112-4. PubMed ID: 16269415
[TBL] [Abstract][Full Text] [Related]
16. The new protein topology graph library web server.
Schäfer T; Scheck A; Bruneß D; May P; Koch I
Bioinformatics; 2016 Feb; 32(3):474-6. PubMed ID: 26446136
[TBL] [Abstract][Full Text] [Related]
17. Transcription Factor Information System (TFIS): A Tool for Detection of Transcription Factor Binding Sites.
Narad P; Kumar A; Chakraborty A; Patni P; Sengupta A; Wadhwa G; Upadhyaya KC
Interdiscip Sci; 2017 Sep; 9(3):378-391. PubMed ID: 27052996
[TBL] [Abstract][Full Text] [Related]
18. MINER: software for phylogenetic motif identification.
La D; Livesay DR
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W267-70. PubMed ID: 15980467
[TBL] [Abstract][Full Text] [Related]
19. ggseqlogo: a versatile R package for drawing sequence logos.
Wagih O
Bioinformatics; 2017 Nov; 33(22):3645-3647. PubMed ID: 29036507
[TBL] [Abstract][Full Text] [Related]
20. BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.
De Witte D; Van de Velde J; Decap D; Van Bel M; Audenaert P; Demeester P; Dhoedt B; Vandepoele K; Fostier J
Bioinformatics; 2015 Dec; 31(23):3758-66. PubMed ID: 26254488
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]