BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 27530777)

  • 1. A Skyline Plugin for Pathway-Centric Data Browsing.
    Degan MG; Ryadinskiy L; Fujimoto GM; Wilkins CS; Lichti CF; Payne SH
    J Am Soc Mass Spectrom; 2016 Nov; 27(11):1752-1757. PubMed ID: 27530777
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A review on mass spectrometry-based quantitative proteomics: Targeted and data independent acquisition.
    Vidova V; Spacil Z
    Anal Chim Acta; 2017 Apr; 964():7-23. PubMed ID: 28351641
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Multiplexed peptide analysis using data-independent acquisition and Skyline.
    Egertson JD; MacLean B; Johnson R; Xuan Y; MacCoss MJ
    Nat Protoc; 2015 Jun; 10(6):887-903. PubMed ID: 25996789
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Targeted Proteomics as a Tool for Quantifying Urine-Based Biomarkers.
    Mohan SV; Nayakanti DS; Sathe G; George IA; Gowda H; Kumar P
    Methods Mol Biol; 2020; 2051():277-295. PubMed ID: 31552634
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated SWATH Data Analysis Using Targeted Extraction of Ion Chromatograms.
    Röst HL; Aebersold R; Schubert OT
    Methods Mol Biol; 2017; 1550():289-307. PubMed ID: 28188537
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Exploring skyline for both MS(E) -based label-free proteomics and HRMS quantitation of small molecules.
    Liu S; Chen X; Yan Z; Qin S; Xu J; Lin J; Yang C; Shui W
    Proteomics; 2014 Feb; 14(2-3):169-80. PubMed ID: 24307133
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline.
    Sharma V; Eckels J; Schilling B; Ludwig C; Jaffe JD; MacCoss MJ; MacLean B
    Mol Cell Proteomics; 2018 Jun; 17(6):1239-1244. PubMed ID: 29487113
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics.
    Adams KJ; Pratt B; Bose N; Dubois LG; St John-Williams L; Perrott KM; Ky K; Kapahi P; Sharma V; MacCoss MJ; Moseley MA; Colton CA; MacLean BX; Schilling B; Thompson JW;
    J Proteome Res; 2020 Apr; 19(4):1447-1458. PubMed ID: 31984744
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A framework for installable external tools in Skyline.
    Broudy D; Killeen T; Choi M; Shulman N; Mani DR; Abbatiello SE; Mani D; Ahmad R; Sahu AK; Schilling B; Tamura K; Boss Y; Sharma V; Gibson BW; Carr SA; Vitek O; MacCoss MJ; MacLean B
    Bioinformatics; 2014 Sep; 30(17):2521-3. PubMed ID: 24813211
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Computational approaches to selected reaction monitoring assay design.
    Bessant C; Fan J
    Methods Mol Biol; 2013; 1007():219-35. PubMed ID: 23666728
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Selected Reaction Monitoring to Measure Proteins of Interest in Complex Samples: A Practical Guide.
    Feng Y; Picotti P
    Methods Mol Biol; 2016; 1394():43-56. PubMed ID: 26700040
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Skyline: an open source document editor for creating and analyzing targeted proteomics experiments.
    MacLean B; Tomazela DM; Shulman N; Chambers M; Finney GL; Frewen B; Kern R; Tabb DL; Liebler DC; MacCoss MJ
    Bioinformatics; 2010 Apr; 26(7):966-8. PubMed ID: 20147306
    [TBL] [Abstract][Full Text] [Related]  

  • 13. SRMBuilder: a user-friendly tool for selected reaction monitoring data analysis.
    Sheng Q; Wu C; Su Z; Zeng R
    J Bioinform Comput Biol; 2011 Dec; 9 Suppl 1():51-62. PubMed ID: 22144253
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Data-Independent Acquisition Mass Spectrometry-Based Proteomics and Software Tools: A Glimpse in 2020.
    Zhang F; Ge W; Ruan G; Cai X; Guo T
    Proteomics; 2020 Sep; 20(17-18):e1900276. PubMed ID: 32275110
    [TBL] [Abstract][Full Text] [Related]  

  • 15. What is targeted proteomics? A concise revision of targeted acquisition and targeted data analysis in mass spectrometry.
    Borràs E; Sabidó E
    Proteomics; 2017 Sep; 17(17-18):. PubMed ID: 28719092
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Strategies for consistent and automated quantification of HDL proteome using data-independent acquisition.
    Souza Junior DR; Silva ARM; Ronsein GE
    J Lipid Res; 2023 Jul; 64(7):100397. PubMed ID: 37286042
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics.
    Peckner R; Myers SA; Jacome ASV; Egertson JD; Abelin JG; MacCoss MJ; Carr SA; Jaffe JD
    Nat Methods; 2018 May; 15(5):371-378. PubMed ID: 29608554
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments.
    Searle BC; Egertson JD; Bollinger JG; Stergachis AB; MacCoss MJ
    Mol Cell Proteomics; 2015 Sep; 14(9):2331-40. PubMed ID: 26100116
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assessment of SRM, MRM(3) , and DIA for the targeted analysis of phosphorylation dynamics in non-small cell lung cancer.
    Schmidlin T; Garrigues L; Lane CS; Mulder TC; van Doorn S; Post H; de Graaf EL; Lemeer S; Heck AJ; Altelaar AF
    Proteomics; 2016 Aug; 16(15-16):2193-205. PubMed ID: 27219855
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiplexed and data-independent tandem mass spectrometry for global proteome profiling.
    Chapman JD; Goodlett DR; Masselon CD
    Mass Spectrom Rev; 2014; 33(6):452-70. PubMed ID: 24281846
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.