212 related articles for article (PubMed ID: 27532298)
1. Inference of Ancestral Recombination Graphs through Topological Data Analysis.
Cámara PG; Levine AJ; Rabadán R
PLoS Comput Biol; 2016 Aug; 12(8):e1005071. PubMed ID: 27532298
[TBL] [Abstract][Full Text] [Related]
2. Phylogenetic networks: modeling, reconstructibility, and accuracy.
Moret BM; Nakhleh L; Warnow T; Linder CR; Tholse A; Padolina A; Sun J; Timme R
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(1):13-23. PubMed ID: 17048405
[TBL] [Abstract][Full Text] [Related]
3. Bayesian inference of ancestral recombination graphs.
Mahmoudi A; Koskela J; Kelleher J; Chan YB; Balding D
PLoS Comput Biol; 2022 Mar; 18(3):e1009960. PubMed ID: 35263345
[TBL] [Abstract][Full Text] [Related]
4. The imperfect ancestral recombination graph reconstruction problem: upper bounds for recombination and homoplasy.
Lam F; Tarpine R; Istrail S
J Comput Biol; 2010 Jun; 17(6):767-81. PubMed ID: 20583925
[TBL] [Abstract][Full Text] [Related]
5. Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.
Mostowy R; Croucher NJ; Andam CP; Corander J; Hanage WP; Marttinen P
Mol Biol Evol; 2017 May; 34(5):1167-1182. PubMed ID: 28199698
[TBL] [Abstract][Full Text] [Related]
6. Reconstructing the Ancestral Relationships Between Bacterial Pathogen Genomes.
Collins C; Didelot X
Methods Mol Biol; 2017; 1535():109-137. PubMed ID: 27914076
[TBL] [Abstract][Full Text] [Related]
7. Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes.
Mirkin BG; Fenner TI; Galperin MY; Koonin EV
BMC Evol Biol; 2003 Jan; 3():2. PubMed ID: 12515582
[TBL] [Abstract][Full Text] [Related]
8. PhyloNet: a software package for analyzing and reconstructing reticulate evolutionary relationships.
Than C; Ruths D; Nakhleh L
BMC Bioinformatics; 2008 Jul; 9():322. PubMed ID: 18662388
[TBL] [Abstract][Full Text] [Related]
9. Analysing recombination in nucleotide sequences.
Martin DP; Lemey P; Posada D
Mol Ecol Resour; 2011 Nov; 11(6):943-55. PubMed ID: 21592314
[TBL] [Abstract][Full Text] [Related]
10. Unifying vertical and nonvertical evolution: a stochastic ARG-based framework.
Bloomquist EW; Suchard MA
Syst Biol; 2010 Jan; 59(1):27-41. PubMed ID: 20525618
[TBL] [Abstract][Full Text] [Related]
11. Bayesian Inference of Reticulate Phylogenies under the Multispecies Network Coalescent.
Wen D; Yu Y; Nakhleh L
PLoS Genet; 2016 May; 12(5):e1006006. PubMed ID: 27144273
[TBL] [Abstract][Full Text] [Related]
12. ClonalFrameML: efficient inference of recombination in whole bacterial genomes.
Didelot X; Wilson DJ
PLoS Comput Biol; 2015 Feb; 11(2):e1004041. PubMed ID: 25675341
[TBL] [Abstract][Full Text] [Related]
13. Reconstructing ancestral genomic sequences by co-evolution: formal definitions, computational issues, and biological examples.
Tuller T; Birin H; Kupiec M; Ruppin E
J Comput Biol; 2010 Sep; 17(9):1327-44. PubMed ID: 20874411
[TBL] [Abstract][Full Text] [Related]
14. Constructing minimal ancestral recombination graphs.
Song YS; Hein J
J Comput Biol; 2005 Mar; 12(2):147-69. PubMed ID: 15767774
[TBL] [Abstract][Full Text] [Related]
15. A Resolution of the Static Formulation Question for the Problem of Computing the History Bound.
Matsieva J; Kelk S; Scornavacca C; Whidden C; Gusfield D
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(2):404-417. PubMed ID: 26887004
[TBL] [Abstract][Full Text] [Related]
16. Phylogenetic inference using whole genomes.
Rannala B; Yang Z
Annu Rev Genomics Hum Genet; 2008; 9():217-31. PubMed ID: 18767964
[TBL] [Abstract][Full Text] [Related]
17. Current Methods for Recombination Detection in Bacteria.
Shikov AE; Malovichko YV; Nizhnikov AA; Antonets KS
Int J Mol Sci; 2022 Jun; 23(11):. PubMed ID: 35682936
[TBL] [Abstract][Full Text] [Related]
18. The number of recombination events in a sample history: conflict graph and lower bounds.
Bafna V; Bansal V
IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(2):78-90. PubMed ID: 17048383
[TBL] [Abstract][Full Text] [Related]
19. Espalier: Efficient Tree Reconciliation and Ancestral Recombination Graphs Reconstruction Using Maximum Agreement Forests.
Rasmussen DA; Guo F
Syst Biol; 2023 Nov; 72(5):1154-1170. PubMed ID: 37458753
[TBL] [Abstract][Full Text] [Related]
20. A Consensus Method for Ancestral Recombination Graphs.
Kuhner MK; Yamato J
J Mol Evol; 2017 Mar; 84(2-3):129-138. PubMed ID: 28285392
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]