BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

187 related articles for article (PubMed ID: 27542770)

  • 21. smallWig: parallel compression of RNA-seq WIG files.
    Wang Z; Weissman T; Milenkovic O
    Bioinformatics; 2016 Jan; 32(2):173-80. PubMed ID: 26424856
    [TBL] [Abstract][Full Text] [Related]  

  • 22. EBSeq-HMM: a Bayesian approach for identifying gene-expression changes in ordered RNA-seq experiments.
    Leng N; Li Y; McIntosh BE; Nguyen BK; Duffin B; Tian S; Thomson JA; Dewey CN; Stewart R; Kendziorski C
    Bioinformatics; 2015 Aug; 31(16):2614-22. PubMed ID: 25847007
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Network module-based model in the differential expression analysis for RNA-seq.
    Lei M; Xu J; Huang LC; Wang L; Li J
    Bioinformatics; 2017 Sep; 33(17):2699-2705. PubMed ID: 28407034
    [TBL] [Abstract][Full Text] [Related]  

  • 24. GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
    Marini F; Ludt A; Linke J; Strauch K
    BMC Bioinformatics; 2021 Dec; 22(1):610. PubMed ID: 34949163
    [TBL] [Abstract][Full Text] [Related]  

  • 25. ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data.
    Ihnatova I; Budinska E
    BMC Bioinformatics; 2015 Oct; 16():350. PubMed ID: 26514335
    [TBL] [Abstract][Full Text] [Related]  

  • 26. pcaExplorer: an R/Bioconductor package for interacting with RNA-seq principal components.
    Marini F; Binder H
    BMC Bioinformatics; 2019 Jun; 20(1):331. PubMed ID: 31195976
    [TBL] [Abstract][Full Text] [Related]  

  • 27. primirTSS: an R package for identifying cell-specific microRNA transcription start sites.
    Li P; Xu Q; Hua X; Xie Z; Li J; Wang J
    Bioinformatics; 2020 Jun; 36(11):3605-3606. PubMed ID: 32170928
    [TBL] [Abstract][Full Text] [Related]  

  • 28. PerSubs: A Graph-Based Algorithm for the Identification of Perturbed Subpathways Caused by Complex Diseases.
    Vrahatis AG; Rapti A; Sioutas S; Tsakalidis A
    Adv Exp Med Biol; 2017; 988():215-224. PubMed ID: 28971401
    [TBL] [Abstract][Full Text] [Related]  

  • 29. PathwaySplice: an R package for unbiased pathway analysis of alternative splicing in RNA-Seq data.
    Yan A; Ban Y; Gao Z; Chen X; Wang L
    Bioinformatics; 2018 Sep; 34(18):3220-3222. PubMed ID: 29688305
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A new approach to bias correction in RNA-Seq.
    Jones DC; Ruzzo WL; Peng X; Katze MG
    Bioinformatics; 2012 Apr; 28(7):921-8. PubMed ID: 22285831
    [TBL] [Abstract][Full Text] [Related]  

  • 31. CTDquerier: a bioconductor R package for Comparative Toxicogenomics DatabaseTM data extraction, visualization and enrichment of environmental and toxicological studies.
    Hernandez-Ferrer C; Gonzalez JR
    Bioinformatics; 2018 Sep; 34(18):3235-3237. PubMed ID: 29688259
    [TBL] [Abstract][Full Text] [Related]  

  • 32. SeqGSEA: a Bioconductor package for gene set enrichment analysis of RNA-Seq data integrating differential expression and splicing.
    Wang X; Cairns MJ
    Bioinformatics; 2014 Jun; 30(12):1777-9. PubMed ID: 24535097
    [TBL] [Abstract][Full Text] [Related]  

  • 33. ILoReg: a tool for high-resolution cell population identification from single-cell RNA-seq data.
    Smolander J; Junttila S; Venäläinen MS; Elo LL
    Bioinformatics; 2021 May; 37(8):1107-1114. PubMed ID: 33151294
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Oasis: online analysis of small RNA deep sequencing data.
    Capece V; Garcia Vizcaino JC; Vidal R; Rahman RU; Pena Centeno T; Shomroni O; Suberviola I; Fischer A; Bonn S
    Bioinformatics; 2015 Jul; 31(13):2205-7. PubMed ID: 25701573
    [TBL] [Abstract][Full Text] [Related]  

  • 35. chimeraviz: a tool for visualizing chimeric RNA.
    Lågstad S; Zhao S; Hoff AM; Johannessen B; Lingjærde OC; Skotheim RI
    Bioinformatics; 2017 Sep; 33(18):2954-2956. PubMed ID: 28525538
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Transcriptogramer: an R/Bioconductor package for transcriptional analysis based on protein-protein interaction.
    Morais DAA; Almeida RMC; Dalmolin RJS
    Bioinformatics; 2019 Aug; 35(16):2875-2876. PubMed ID: 30624611
    [TBL] [Abstract][Full Text] [Related]  

  • 37. PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.
    Wen B; Xu S; Zhou R; Zhang B; Wang X; Liu X; Xu X; Liu S
    BMC Bioinformatics; 2016 Jun; 17(1):244. PubMed ID: 27316337
    [TBL] [Abstract][Full Text] [Related]  

  • 38. powsimR: power analysis for bulk and single cell RNA-seq experiments.
    Vieth B; Ziegenhain C; Parekh S; Enard W; Hellmann I
    Bioinformatics; 2017 Nov; 33(21):3486-3488. PubMed ID: 29036287
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Normalization and noise reduction for single cell RNA-seq experiments.
    Ding B; Zheng L; Zhu Y; Li N; Jia H; Ai R; Wildberg A; Wang W
    Bioinformatics; 2015 Jul; 31(13):2225-7. PubMed ID: 25717193
    [TBL] [Abstract][Full Text] [Related]  

  • 40. DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.
    Chiu TP; Comoglio F; Zhou T; Yang L; Paro R; Rohs R
    Bioinformatics; 2016 Apr; 32(8):1211-3. PubMed ID: 26668005
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.