These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 27551106)

  • 1. PPI4DOCK: large scale assessment of the use of homology models in free docking over more than 1000 realistic targets.
    Yu J; Guerois R
    Bioinformatics; 2016 Dec; 32(24):3760-3767. PubMed ID: 27551106
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RRDB: a comprehensive and non-redundant benchmark for RNA-RNA docking and scoring.
    Yan Y; Huang SY
    Bioinformatics; 2018 Feb; 34(3):453-458. PubMed ID: 29028888
    [TBL] [Abstract][Full Text] [Related]  

  • 3. InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs.
    Quignot C; Rey J; Yu J; Tufféry P; Guerois R; Andreani J
    Nucleic Acids Res; 2018 Jul; 46(W1):W408-W416. PubMed ID: 29741647
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DOCKGROUND system of databases for protein recognition studies: unbound structures for docking.
    Gao Y; Douguet D; Tovchigrechko A; Vakser IA
    Proteins; 2007 Dec; 69(4):845-51. PubMed ID: 17803215
    [TBL] [Abstract][Full Text] [Related]  

  • 5. DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes.
    Amir N; Cohen D; Wolfson HJ
    Bioinformatics; 2015 Sep; 31(17):2801-7. PubMed ID: 25913207
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource.
    Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA
    BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A non-redundant protein-RNA docking benchmark version 2.0.
    Nithin C; Mukherjee S; Bahadur RP
    Proteins; 2017 Feb; 85(2):256-267. PubMed ID: 27862282
    [TBL] [Abstract][Full Text] [Related]  

  • 8. InterEvScore: a novel coarse-grained interface scoring function using a multi-body statistical potential coupled to evolution.
    Andreani J; Faure G; Guerois R
    Bioinformatics; 2013 Jul; 29(14):1742-9. PubMed ID: 23652426
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A protein-RNA docking benchmark (II): extended set from experimental and homology modeling data.
    Pérez-Cano L; Jiménez-García B; Fernández-Recio J
    Proteins; 2012 Jul; 80(7):1872-82. PubMed ID: 22488990
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.
    Chen H; Sun Y; Shen Y
    Proteins; 2017 Mar; 85(3):544-556. PubMed ID: 27862345
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
    Vreven T; Pierce BG; Borrman TM; Weng Z
    Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
    [TBL] [Abstract][Full Text] [Related]  

  • 12. InterEvDock3: a combined template-based and free docking server with increased performance through explicit modeling of complex homologs and integration of covariation-based contact maps.
    Quignot C; Postic G; Bret H; Rey J; Granger P; Murail S; Chacón P; Andreani J; Tufféry P; Guerois R
    Nucleic Acids Res; 2021 Jul; 49(W1):W277-W284. PubMed ID: 33978743
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein-ensemble-RNA docking by efficient consideration of protein flexibility through homology models.
    He J; Tao H; Huang SY
    Bioinformatics; 2019 Dec; 35(23):4994-5002. PubMed ID: 31086984
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein-protein interaction specificity is captured by contact preferences and interface composition.
    Nadalin F; Carbone A
    Bioinformatics; 2018 Feb; 34(3):459-468. PubMed ID: 29028884
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Protein-Protein Docking Benchmark 2.0: an update.
    Mintseris J; Wiehe K; Pierce B; Anderson R; Chen R; Janin J; Weng Z
    Proteins; 2005 Aug; 60(2):214-6. PubMed ID: 15981264
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Docking and scoring protein complexes: CAPRI 3rd Edition.
    Lensink MF; Méndez R; Wodak SJ
    Proteins; 2007 Dec; 69(4):704-18. PubMed ID: 17918726
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein docking using case-based reasoning.
    Ghoorah AW; Devignes MD; Smaïl-Tabbone M; Ritchie DW
    Proteins; 2013 Dec; 81(12):2150-8. PubMed ID: 24123156
    [TBL] [Abstract][Full Text] [Related]  

  • 19. LightDock: a new multi-scale approach to protein-protein docking.
    Jiménez-García B; Roel-Touris J; Romero-Durana M; Vidal M; Jiménez-González D; Fernández-Recio J
    Bioinformatics; 2018 Jan; 34(1):49-55. PubMed ID: 28968719
    [TBL] [Abstract][Full Text] [Related]  

  • 20. DOCKGROUND protein-protein docking decoy set.
    Liu S; Gao Y; Vakser IA
    Bioinformatics; 2008 Nov; 24(22):2634-5. PubMed ID: 18812365
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.