BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

2564 related articles for article (PubMed ID: 27556805)

  • 21. SplicingTypesAnno: annotating and quantifying alternative splicing events for RNA-Seq data.
    Sun X; Zuo F; Ru Y; Guo J; Yan X; Sablok G
    Comput Methods Programs Biomed; 2015 Apr; 119(1):53-62. PubMed ID: 25720307
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Acute Endoplasmic Reticulum Stress-Independent Unconventional Splicing of XBP1 mRNA in the Nucleus of Mammalian Cells.
    Wang Y; Xing P; Cui W; Wang W; Cui Y; Ying G; Wang X; Li B
    Int J Mol Sci; 2015 Jun; 16(6):13302-21. PubMed ID: 26068456
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Alternative Splicing Signatures in RNA-seq Data: Percent Spliced in (PSI).
    Schafer S; Miao K; Benson CC; Heinig M; Cook SA; Hubner N
    Curr Protoc Hum Genet; 2015 Oct; 87():11.16.1-11.16.14. PubMed ID: 26439713
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive.
    Nellore A; Jaffe AE; Fortin JP; Alquicira-Hernández J; Collado-Torres L; Wang S; Phillips RA; Karbhari N; Hansen KD; Langmead B; Leek JT
    Genome Biol; 2016 Dec; 17(1):266. PubMed ID: 28038678
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Identification Exon Skipping Events From High-Throughput RNA Sequencing Data.
    Bai Y; Ji S; Jiang Q; Wang Y
    IEEE Trans Nanobioscience; 2015 Jul; 14(5):562-9. PubMed ID: 25935040
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SL-quant: a fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data.
    Yague-Sanz C; Hermand D
    Gigascience; 2018 Jul; 7(7):. PubMed ID: 30010768
    [TBL] [Abstract][Full Text] [Related]  

  • 27. TAP: a targeted clinical genomics pipeline for detecting transcript variants using RNA-seq data.
    Chiu R; Nip KM; Chu J; Birol I
    BMC Med Genomics; 2018 Sep; 11(1):79. PubMed ID: 30200994
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Computational Methods and Correlation of Exon-skipping Events with Splicing, Transcription, and Epigenetic Factors.
    Wang J; Ye Z; Huang TH; Shi H; Jin VX
    Methods Mol Biol; 2017; 1513():163-170. PubMed ID: 27807836
    [TBL] [Abstract][Full Text] [Related]  

  • 29. SpliceFinder: ab initio prediction of splice sites using convolutional neural network.
    Wang R; Wang Z; Wang J; Li S
    BMC Bioinformatics; 2019 Dec; 20(Suppl 23):652. PubMed ID: 31881982
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Identification of novel alternative splicing biomarkers for breast cancer with LC/MS/MS and RNA-Seq.
    Zhang F; Deng CK; Wang M; Deng B; Barber R; Huang G
    BMC Bioinformatics; 2020 Dec; 21(Suppl 9):541. PubMed ID: 33272210
    [TBL] [Abstract][Full Text] [Related]  

  • 31. RNA-Seq read alignments with PALMapper.
    Jean G; Kahles A; Sreedharan VT; De Bona F; Rätsch G
    Curr Protoc Bioinformatics; 2010 Dec; Chapter 11():Unit 11.6. PubMed ID: 21154708
    [TBL] [Abstract][Full Text] [Related]  

  • 32. IRE1α-XBP1 pathway promotes melanoma progression by regulating IL-6/STAT3 signaling.
    Chen C; Zhang X
    J Transl Med; 2017 Feb; 15(1):42. PubMed ID: 28222747
    [TBL] [Abstract][Full Text] [Related]  

  • 33. AS-Quant: Detection and Visualization of Alternative Splicing Events with RNA-seq Data.
    Fahmi NA; Nassereddeen H; Chang J; Park M; Yeh H; Sun J; Fan D; Yong J; Zhang W
    Int J Mol Sci; 2021 Apr; 22(9):. PubMed ID: 33922891
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SpliceVec: Distributed feature representations for splice junction prediction.
    Dutta A; Dubey T; Singh KK; Anand A
    Comput Biol Chem; 2018 Jun; 74():434-441. PubMed ID: 29580738
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Predicting mutually exclusive spliced exons based on exon length, splice site and reading frame conservation, and exon sequence homology.
    Pillmann H; Hatje K; Odronitz F; Hammesfahr B; Kollmar M
    BMC Bioinformatics; 2011 Jun; 12():270. PubMed ID: 21718515
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Two novel arginine/serine (SR) proteins in maize are differentially spliced and utilize non-canonical splice sites.
    Gupta S; Wang BB; Stryker GA; Zanetti ME; Lal SK
    Biochim Biophys Acta; 2005 May; 1728(3):105-14. PubMed ID: 15780972
    [TBL] [Abstract][Full Text] [Related]  

  • 37. The unfolded protein response sensor IRE1alpha is required at 2 distinct steps in B cell lymphopoiesis.
    Zhang K; Wong HN; Song B; Miller CN; Scheuner D; Kaufman RJ
    J Clin Invest; 2005 Feb; 115(2):268-81. PubMed ID: 15690081
    [TBL] [Abstract][Full Text] [Related]  

  • 38. [Analysis, identification and correction of some errors of model refseqs appeared in NCBI Human Gene Database by in silico cloning and experimental verification of novel human genes].
    Zhang DL; Ji L; Li YD
    Yi Chuan Xue Bao; 2004 May; 31(5):431-43. PubMed ID: 15478601
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Parallel computation of genome-scale RNA secondary structure to detect structural constraints on human genome.
    Kawaguchi R; Kiryu H
    BMC Bioinformatics; 2016 May; 17(1):203. PubMed ID: 27153986
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Observations on novel splice junctions from RNA sequencing data.
    Wang L; Wang X; Wang X; Liang Y; Zhang X
    Biochem Biophys Res Commun; 2011 Jun; 409(2):299-303. PubMed ID: 21575597
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 129.