BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 27559159)

  • 1. Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V'DJer.
    Mose LE; Selitsky SR; Bixby LM; Marron DL; Iglesia MD; Serody JS; Perou CM; Vincent BG; Parker JS
    Bioinformatics; 2016 Dec; 32(24):3729-3734. PubMed ID: 27559159
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BASIC: BCR assembly from single cells.
    Canzar S; Neu KE; Tang Q; Wilson PC; Khan AA
    Bioinformatics; 2017 Feb; 33(3):425-427. PubMed ID: 28172415
    [TBL] [Abstract][Full Text] [Related]  

  • 3. B-cell receptor reconstruction from single-cell RNA-seq with VDJPuzzle.
    Rizzetto S; Koppstein DNP; Samir J; Singh M; Reed JH; Cai CH; Lloyd AR; Eltahla AA; Goodnow CC; Luciani F
    Bioinformatics; 2018 Aug; 34(16):2846-2847. PubMed ID: 29659703
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Prognostic value of B cells in cutaneous melanoma.
    Selitsky SR; Mose LE; Smith CC; Chai S; Hoadley KA; Dittmer DP; Moschos SJ; Parker JS; Vincent BG
    Genome Med; 2019 May; 11(1):36. PubMed ID: 31138334
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A computational method for estimating the PCR duplication rate in DNA and RNA-seq experiments.
    Bansal V
    BMC Bioinformatics; 2017 Mar; 18(Suppl 3):43. PubMed ID: 28361665
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Reconstructing B-cell receptor sequences from short-read single-cell RNA sequencing with BRAPeS.
    Afik S; Raulet G; Yosef N
    Life Sci Alliance; 2019 Aug; 2(4):. PubMed ID: 31451449
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Read-Split-Run: an improved bioinformatics pipeline for identification of genome-wide non-canonical spliced regions using RNA-Seq data.
    Bai Y; Kinne J; Donham B; Jiang F; Ding L; Hassler JR; Kaufman RJ
    BMC Genomics; 2016 Aug; 17 Suppl 7(Suppl 7):503. PubMed ID: 27556805
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.
    Benidt S; Nettleton D
    Bioinformatics; 2015 Jul; 31(13):2131-40. PubMed ID: 25725090
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Computational Analysis of B-Cell Receptor (BCR) Immune Repertoires with Abalign.
    Wei J; Li J; Zong F; Xiao ZX; Cao Y
    Curr Protoc; 2024 Feb; 4(2):e1002. PubMed ID: 38406972
    [TBL] [Abstract][Full Text] [Related]  

  • 10. OSA: a fast and accurate alignment tool for RNA-Seq.
    Hu J; Ge H; Newman M; Liu K
    Bioinformatics; 2012 Jul; 28(14):1933-4. PubMed ID: 22592379
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An ultra-sensitive T-cell receptor detection method for TCR-Seq and RNA-Seq data.
    Chen SY; Liu CJ; Zhang Q; Guo AY
    Bioinformatics; 2020 Aug; 36(15):4255-4262. PubMed ID: 32399561
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
    Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH
    Front Immunol; 2018; 9():1877. PubMed ID: 30166985
    [TBL] [Abstract][Full Text] [Related]  

  • 13. QuASAR: quantitative allele-specific analysis of reads.
    Harvey CT; Moyerbrailean GA; Davis GO; Wen X; Luca F; Pique-Regi R
    Bioinformatics; 2015 Apr; 31(8):1235-42. PubMed ID: 25480375
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Capturing needles in haystacks: a comparison of B-cell receptor sequencing methods.
    Bashford-Rogers RJ; Palser AL; Idris SF; Carter L; Epstein M; Callard RE; Douek DC; Vassiliou GS; Follows GA; Hubank M; Kellam P
    BMC Immunol; 2014 Aug; 15():29. PubMed ID: 25189176
    [TBL] [Abstract][Full Text] [Related]  

  • 15. rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.
    Shi Y; Chinnaiyan AM; Jiang H
    Bioinformatics; 2015 Jul; 31(13):2222-4. PubMed ID: 25717189
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Structural diversity of B-cell receptor repertoires along the B-cell differentiation axis in humans and mice.
    Kovaltsuk A; Raybould MIJ; Wong WK; Marks C; Kelm S; Snowden J; Trück J; Deane CM
    PLoS Comput Biol; 2020 Feb; 16(2):e1007636. PubMed ID: 32069281
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
    Yang A; Troup M; Lin P; Ho JW
    Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200
    [TBL] [Abstract][Full Text] [Related]  

  • 18. BPP: a sequence-based algorithm for branch point prediction.
    Zhang Q; Fan X; Wang Y; Sun MA; Shao J; Guo D
    Bioinformatics; 2017 Oct; 33(20):3166-3172. PubMed ID: 28633445
    [TBL] [Abstract][Full Text] [Related]  

  • 19. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
    Srivastava A; Sarkar H; Gupta N; Patro R
    Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Snaptron: querying splicing patterns across tens of thousands of RNA-seq samples.
    Wilks C; Gaddipati P; Nellore A; Langmead B
    Bioinformatics; 2018 Jan; 34(1):114-116. PubMed ID: 28968689
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.