These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
100 related articles for article (PubMed ID: 27567382)
1. Protein side-chain packing problem: is there still room for improvement? Colbes J; Corona RI; Lezcano C; Rodríguez D; Brizuela CA Brief Bioinform; 2017 Nov; 18(6):1033-1043. PubMed ID: 27567382 [TBL] [Abstract][Full Text] [Related]
2. Improved packing of protein side chains with parallel ant colonies. Quan L; Lü Q; Li H; Xia X; Wu H BMC Bioinformatics; 2014; 15 Suppl 12(Suppl 12):S5. PubMed ID: 25474164 [TBL] [Abstract][Full Text] [Related]
4. Improved side-chain prediction accuracy using an ab initio potential energy function and a very large rotamer library. Peterson RW; Dutton PL; Wand AJ Protein Sci; 2004 Mar; 13(3):735-51. PubMed ID: 14978310 [TBL] [Abstract][Full Text] [Related]
5. Scoring of Side-Chain Packings: An Analysis of Weight Factors and Molecular Dynamics Structures. Colbes J; Aguila SA; Brizuela CA J Chem Inf Model; 2018 Feb; 58(2):443-452. PubMed ID: 29368924 [TBL] [Abstract][Full Text] [Related]
6. Side-chain modeling with an optimized scoring function. Liang S; Grishin NV Protein Sci; 2002 Feb; 11(2):322-31. PubMed ID: 11790842 [TBL] [Abstract][Full Text] [Related]
7. Residues with similar hexagon neighborhoods share similar side-chain conformations. Li SC; Bu D; Li M IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):240-8. PubMed ID: 21519113 [TBL] [Abstract][Full Text] [Related]
8. Protein side-chain modeling with a protein-dependent optimized rotamer library. Francis-Lyon P; Koehl P Proteins; 2014 Sep; 82(9):2000-17. PubMed ID: 24623614 [TBL] [Abstract][Full Text] [Related]
9. Minimizing and learning energy functions for side-chain prediction. Yanover C; Schueler-Furman O; Weiss Y J Comput Biol; 2008 Sep; 15(7):899-911. PubMed ID: 18707538 [TBL] [Abstract][Full Text] [Related]
10. GEM: a Gaussian Evolutionary Method for predicting protein side-chain conformations. Yang JM; Tsai CH; Hwang MJ; Tsai HK; Hwang JK; Kao CY Protein Sci; 2002 Aug; 11(8):1897-907. PubMed ID: 12142444 [TBL] [Abstract][Full Text] [Related]
11. Extending the accuracy limits of prediction for side-chain conformations. Xiang Z; Honig B J Mol Biol; 2001 Aug; 311(2):421-30. PubMed ID: 11478870 [TBL] [Abstract][Full Text] [Related]
12. Beyond the rotamer library: genetic algorithm combined with the disturbing mutation process for upbuilding protein side-chains. Liu Z; Jiang L; Gao Y; Liang S; Chen H; Han Y; Lai L Proteins; 2003 Jan; 50(1):49-62. PubMed ID: 12471599 [TBL] [Abstract][Full Text] [Related]
13. Assessment of protein side-chain conformation prediction methods in different residue environments. Peterson LX; Kang X; Kihara D Proteins; 2014 Sep; 82(9):1971-84. PubMed ID: 24619909 [TBL] [Abstract][Full Text] [Related]
14. Incorporating knowledge-based biases into an energy-based side-chain modeling method: application to comparative modeling of protein structure. Mendes J; Nagarajaram HA; Soares CM; Blundell TL; Carrondo MA Biopolymers; 2001 Aug; 59(2):72-86. PubMed ID: 11373721 [TBL] [Abstract][Full Text] [Related]
15. Improved energy bound accuracy enhances the efficiency of continuous protein design. Roberts KE; Donald BR Proteins; 2015 Jun; 83(6):1151-64. PubMed ID: 25846627 [TBL] [Abstract][Full Text] [Related]
16. Multiple methods for protein side chain packing using maximum weight cliques. Brown JB; Dukka Bahadur KC; Tomita E; Akutsu T Genome Inform; 2006; 17(1):3-12. PubMed ID: 17503351 [TBL] [Abstract][Full Text] [Related]
17. Combining evolutionary and structural information for local protein structure prediction. Pei J; Grishin NV Proteins; 2004 Sep; 56(4):782-94. PubMed ID: 15281130 [TBL] [Abstract][Full Text] [Related]