90 related articles for article (PubMed ID: 27574199)
1. Discovering cis-Regulatory Motifs.
Hung JH; Weng Z
Cold Spring Harb Protoc; 2017 Feb; 2017(2):. PubMed ID: 27574199
[TBL] [Abstract][Full Text] [Related]
2. MEME-ChIP: motif analysis of large DNA datasets.
Machanick P; Bailey TL
Bioinformatics; 2011 Jun; 27(12):1696-7. PubMed ID: 21486936
[TBL] [Abstract][Full Text] [Related]
3. RSAT::Plants: Motif Discovery in ChIP-Seq Peaks of Plant Genomes.
Castro-Mondragon JA; Rioualen C; Contreras-Moreira B; van Helden J
Methods Mol Biol; 2016; 1482():297-322. PubMed ID: 27557775
[TBL] [Abstract][Full Text] [Related]
4. Crunch: integrated processing and modeling of ChIP-seq data in terms of regulatory motifs.
Berger S; Pachkov M; Arnold P; Omidi S; Kelley N; Salatino S; van Nimwegen E
Genome Res; 2019 Jul; 29(7):1164-1177. PubMed ID: 31138617
[TBL] [Abstract][Full Text] [Related]
5. Discovering Gene Regulatory Elements Using Coverage-Based Heuristics.
Al-Ouran R; Schmidt R; Naik A; Jones J; Drews F; Juedes D; Elnitski L; Welch L
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(4):1290-1300. PubMed ID: 26540692
[TBL] [Abstract][Full Text] [Related]
6. Localized motif discovery in gene regulatory sequences.
Narang V; Mittal A; Sung WK
Bioinformatics; 2010 May; 26(9):1152-9. PubMed ID: 20223835
[TBL] [Abstract][Full Text] [Related]
7. Discovering sequence motifs.
Bailey TL
Methods Mol Biol; 2008; 452():231-51. PubMed ID: 18566768
[TBL] [Abstract][Full Text] [Related]
8. MEME SUITE: tools for motif discovery and searching.
Bailey TL; Boden M; Buske FA; Frith M; Grant CE; Clementi L; Ren J; Li WW; Noble WS
Nucleic Acids Res; 2009 Jul; 37(Web Server issue):W202-8. PubMed ID: 19458158
[TBL] [Abstract][Full Text] [Related]
9. W-ChIPMotifs: a web application tool for de novo motif discovery from ChIP-based high-throughput data.
Jin VX; Apostolos J; Nagisetty NS; Farnham PJ
Bioinformatics; 2009 Dec; 25(23):3191-3. PubMed ID: 19797408
[TBL] [Abstract][Full Text] [Related]
10. MODSIDE: a motif discovery pipeline and similarity detector.
Tran NTL; Huang CH
BMC Genomics; 2018 Oct; 19(1):755. PubMed ID: 30340511
[TBL] [Abstract][Full Text] [Related]
11. STREME: accurate and versatile sequence motif discovery.
Bailey TL
Bioinformatics; 2021 Sep; 37(18):2834-2840. PubMed ID: 33760053
[TBL] [Abstract][Full Text] [Related]
12. The value of position-specific priors in motif discovery using MEME.
Bailey TL; Bodén M; Whitington T; Machanick P
BMC Bioinformatics; 2010 Apr; 11():179. PubMed ID: 20380693
[TBL] [Abstract][Full Text] [Related]
13. Ab initio identification of putative human transcription factor binding sites by comparative genomics.
Corà D; Herrmann C; Dieterich C; Di Cunto F; Provero P; Caselle M
BMC Bioinformatics; 2005 May; 6():110. PubMed ID: 15865625
[TBL] [Abstract][Full Text] [Related]
14. The BaMM web server for de-novo motif discovery and regulatory sequence analysis.
Kiesel A; Roth C; Ge W; Wess M; Meier M; Söding J
Nucleic Acids Res; 2018 Jul; 46(W1):W215-W220. PubMed ID: 29846656
[TBL] [Abstract][Full Text] [Related]
15. Detection of functional DNA motifs via statistical over-representation.
Frith MC; Fu Y; Yu L; Chen JF; Hansen U; Weng Z
Nucleic Acids Res; 2004; 32(4):1372-81. PubMed ID: 14988425
[TBL] [Abstract][Full Text] [Related]
16. Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space.
Karnik R; Beer MA
PLoS One; 2015; 10(10):e0140557. PubMed ID: 26465884
[TBL] [Abstract][Full Text] [Related]
17. NestedMICA: sensitive inference of over-represented motifs in nucleic acid sequence.
Down TA; Hubbard TJ
Nucleic Acids Res; 2005; 33(5):1445-53. PubMed ID: 15760844
[TBL] [Abstract][Full Text] [Related]
18. RSAT 2018: regulatory sequence analysis tools 20th anniversary.
Nguyen NTT; Contreras-Moreira B; Castro-Mondragon JA; Santana-Garcia W; Ossio R; Robles-Espinoza CD; Bahin M; Collombet S; Vincens P; Thieffry D; van Helden J; Medina-Rivera A; Thomas-Chollier M
Nucleic Acids Res; 2018 Jul; 46(W1):W209-W214. PubMed ID: 29722874
[TBL] [Abstract][Full Text] [Related]
19. Motif Finding.
Hung JH; Weng Z
Cold Spring Harb Protoc; 2017 Feb; 2017(2):. PubMed ID: 27574195
[TBL] [Abstract][Full Text] [Related]
20. An artificial intelligence approach to motif discovery in protein sequences: application to steriod dehydrogenases.
Bailey TL; Baker ME; Elkan CP
J Steroid Biochem Mol Biol; 1997 May; 62(1):29-44. PubMed ID: 9366496
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
