These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

69 related articles for article (PubMed ID: 27574204)

  • 21. Challenges in exome analysis by LifeScope and its alternative computational pipelines.
    Pranckevičiene E; Rančelis T; Pranculis A; Kučinskas V
    BMC Res Notes; 2015 Sep; 8():421. PubMed ID: 26346699
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Challenges and advances for transcriptome assembly in non-model species.
    Ungaro A; Pech N; Martin JF; McCairns RJS; Mévy JP; Chappaz R; Gilles A
    PLoS One; 2017; 12(9):e0185020. PubMed ID: 28931057
    [TBL] [Abstract][Full Text] [Related]  

  • 23. A tandem simulation framework for predicting mapping quality.
    Langmead B
    Genome Biol; 2017 Aug; 18(1):152. PubMed ID: 28806977
    [TBL] [Abstract][Full Text] [Related]  

  • 24. FHAST: FPGA-Based Acceleration of Bowtie in Hardware.
    Fernandez EB; Villarreal J; Lonardi S; Najjar WA
    IEEE/ACM Trans Comput Biol Bioinform; 2015; 12(5):973-81. PubMed ID: 26451812
    [TBL] [Abstract][Full Text] [Related]  

  • 25. mapDamage: testing for damage patterns in ancient DNA sequences.
    Ginolhac A; Rasmussen M; Gilbert MT; Willerslev E; Orlando L
    Bioinformatics; 2011 Aug; 27(15):2153-5. PubMed ID: 21659319
    [TBL] [Abstract][Full Text] [Related]  

  • 26. SOAP2: an improved ultrafast tool for short read alignment.
    Li R; Yu C; Li Y; Lam TW; Yiu SM; Kristiansen K; Wang J
    Bioinformatics; 2009 Aug; 25(15):1966-7. PubMed ID: 19497933
    [TBL] [Abstract][Full Text] [Related]  

  • 27. QuorUM: An Error Corrector for Illumina Reads.
    Marçais G; Yorke JA; Zimin A
    PLoS One; 2015; 10(6):e0130821. PubMed ID: 26083032
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Variant Calling From Next Generation Sequence Data.
    Hansen NF
    Methods Mol Biol; 2016; 1418():209-24. PubMed ID: 27008017
    [TBL] [Abstract][Full Text] [Related]  

  • 29. GMAP and GSNAP for Genomic Sequence Alignment: Enhancements to Speed, Accuracy, and Functionality.
    Wu TD; Reeder J; Lawrence M; Becker G; Brauer MJ
    Methods Mol Biol; 2016; 1418():283-334. PubMed ID: 27008021
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Metagenomics: read length matters.
    Wommack KE; Bhavsar J; Ravel J
    Appl Environ Microbiol; 2008 Mar; 74(5):1453-63. PubMed ID: 18192407
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Subset selection of high-depth next generation sequencing reads for de novo genome assembly using MapReduce framework.
    Fang CH; Chang YJ; Chung WC; Hsieh PH; Lin CY; Ho JM
    BMC Genomics; 2015; 16 Suppl 12(Suppl 12):S9. PubMed ID: 26678408
    [TBL] [Abstract][Full Text] [Related]  

  • 32. A tool for analyzing mate pairs in assemblies (TAMPA).
    Dew IM; Walenz B; Sutton G
    J Comput Biol; 2005 Jun; 12(5):497-513. PubMed ID: 15952874
    [TBL] [Abstract][Full Text] [Related]  

  • 33. SHREC: a short-read error correction method.
    Schröder J; Schröder H; Puglisi SJ; Sinha R; Schmidt B
    Bioinformatics; 2009 Sep; 25(17):2157-63. PubMed ID: 19542152
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Bio-samtools: Ruby bindings for SAMtools, a library for accessing BAM files containing high-throughput sequence alignments.
    Ramirez-Gonzalez RH; Bonnal R; Caccamo M; Maclean D
    Source Code Biol Med; 2012 May; 7(1):6. PubMed ID: 22640879
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Technology dictates algorithms: recent developments in read alignment.
    Alser M; Rotman J; Deshpande D; Taraszka K; Shi H; Baykal PI; Yang HT; Xue V; Knyazev S; Singer BD; Balliu B; Koslicki D; Skums P; Zelikovsky A; Alkan C; Mutlu O; Mangul S
    Genome Biol; 2021 Aug; 22(1):249. PubMed ID: 34446078
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Slim-filter: an interactive Windows-based application for illumina genome analyzer data assessment and manipulation.
    Golovko G; Khanipov K; Rojas M; Martinez-Alcántara A; Howard JJ; Ballesteros E; Gupta S; Widger W; Fofanov Y
    BMC Bioinformatics; 2012 Jul; 13():166. PubMed ID: 22800377
    [TBL] [Abstract][Full Text] [Related]  

  • 37. BEDTools: The Swiss-Army Tool for Genome Feature Analysis.
    Quinlan AR
    Curr Protoc Bioinformatics; 2014 Sep; 47():11.12.1-34. PubMed ID: 25199790
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The case for cloud computing in genome informatics.
    Stein LD
    Genome Biol; 2010; 11(5):207. PubMed ID: 20441614
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Late-night thoughts on the sequence annotation problem.
    Wheelan SJ; Boguski MS
    Genome Res; 1998 Mar; 8(3):168-9. PubMed ID: 9521919
    [No Abstract]   [Full Text] [Related]  

  • 40. More complete genomes.
    Tang L
    Nat Methods; 2021 Jan; 18(1):29. PubMed ID: 33408391
    [No Abstract]   [Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 4.