111 related articles for article (PubMed ID: 27576722)
1. Bioinformatic Analysis of ChIP-seq Data on the Repetitive Ribosomal RNA Gene.
Schwartz U; Längst G
Methods Mol Biol; 2016; 1455():225-30. PubMed ID: 27576722
[TBL] [Abstract][Full Text] [Related]
2. Epigenetics and Control of RNAs.
Maatz H; van Heesch S; Kreuchwig F; Faber A; Adami E; Hubner N; Heinig M
Methods Mol Biol; 2017; 1488():217-237. PubMed ID: 27933526
[TBL] [Abstract][Full Text] [Related]
3. A high-resolution whole-genome map of the distinctive epigenomic landscape induced by butyrate in bovine cells.
Shin JH; Xu L; Li RW; Gao Y; Bickhart D; Liu GE; Baldwin R; Li CJ
Anim Genet; 2014 Aug; 45 Suppl 1():40-50. PubMed ID: 24990294
[TBL] [Abstract][Full Text] [Related]
4. Epigenetic analysis: ChIP-chip and ChIP-seq.
Pellegrini M; Ferrari R
Methods Mol Biol; 2012; 802():377-87. PubMed ID: 22130894
[TBL] [Abstract][Full Text] [Related]
5. Identification of Candidate Functional Elements in the Genome from ChIP-seq Data.
Marinov GK
Methods Mol Biol; 2017; 1543():19-43. PubMed ID: 28349420
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq.
Li J; Li R; Wang Y; Hu X; Zhao Y; Li L; Feng C; Gu X; Liang F; Lamont SJ; Hu S; Zhou H; Li N
BMC Genomics; 2015 Oct; 16():851. PubMed ID: 26497311
[TBL] [Abstract][Full Text] [Related]
7. Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe.
Vallabh S; Kartashov AV; Barski A
Methods Mol Biol; 2018; 1783():343-360. PubMed ID: 29767371
[TBL] [Abstract][Full Text] [Related]
8. Complete Sequence Construction of the Highly Repetitive Ribosomal RNA Gene Repeats in Eukaryotes Using Whole Genome Sequence Data.
Agrawal S; Ganley AR
Methods Mol Biol; 2016; 1455():161-81. PubMed ID: 27576718
[TBL] [Abstract][Full Text] [Related]
9. An Integrated and Semiautomated Microscaled Approach to Profile Cis-Regulatory Elements by Histone Modification ChIP-Seq for Large-Scale Epigenetic Studies.
Youhanna Jankeel D; Cayford J; Schmiedel BJ; Vijayanand P; Seumois G
Methods Mol Biol; 2018; 1799():303-326. PubMed ID: 29956160
[TBL] [Abstract][Full Text] [Related]
10. The histone demethylase KDM3A regulates the transcriptional program of the androgen receptor in prostate cancer cells.
Wilson S; Fan L; Sahgal N; Qi J; Filipp FV
Oncotarget; 2017 May; 8(18):30328-30343. PubMed ID: 28416760
[TBL] [Abstract][Full Text] [Related]
11. Genome-wide mapping of nucleosome occupancy, histone modifications, and gene expression using next-generation sequencing technology.
Wei G; Hu G; Cui K; Zhao K
Methods Enzymol; 2012; 513():297-313. PubMed ID: 22929775
[TBL] [Abstract][Full Text] [Related]
12. ALEA: a toolbox for allele-specific epigenomics analysis.
Younesy H; Möller T; Heravi-Moussavi A; Cheng JB; Costello JF; Lorincz MC; Karimi MM; Jones SJ
Bioinformatics; 2014 Apr; 30(8):1172-1174. PubMed ID: 24371156
[TBL] [Abstract][Full Text] [Related]
13. A High-Throughput Chromatin Immunoprecipitation Sequencing Approach to Study the Role of MYC on the Epigenetic Landscape.
Fagnocchi L; Zippo A
Methods Mol Biol; 2021; 2318():187-208. PubMed ID: 34019291
[TBL] [Abstract][Full Text] [Related]
14. histoneHMM: Differential analysis of histone modifications with broad genomic footprints.
Heinig M; Colomé-Tatché M; Taudt A; Rintisch C; Schafer S; Pravenec M; Hubner N; Vingron M; Johannes F
BMC Bioinformatics; 2015 Feb; 16():60. PubMed ID: 25884684
[TBL] [Abstract][Full Text] [Related]
15. Quantitative analysis of ChIP-seq data uncovers dynamic and sustained H3K4me3 and H3K27me3 modulation in cancer cells under hypoxia.
Adriaens ME; Prickaerts P; Chan-Seng-Yue M; van den Beucken T; Dahlmans VEH; Eijssen LM; Beck T; Wouters BG; Voncken JW; Evelo CTA
Epigenetics Chromatin; 2016; 9():48. PubMed ID: 27822313
[TBL] [Abstract][Full Text] [Related]
16. Statistical Analysis and Quality Assessment of ChIP-seq Data with DROMPA.
Nakato R; Shirahige K
Methods Mol Biol; 2018; 1672():631-643. PubMed ID: 29043652
[TBL] [Abstract][Full Text] [Related]
17. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data.
Zang C; Schones DE; Zeng C; Cui K; Zhao K; Peng W
Bioinformatics; 2009 Aug; 25(15):1952-8. PubMed ID: 19505939
[TBL] [Abstract][Full Text] [Related]
18. Identifying differential histone modification sites from ChIP-seq data.
Xu H; Sung WK
Methods Mol Biol; 2012; 802():293-303. PubMed ID: 22130888
[TBL] [Abstract][Full Text] [Related]
19. Genome-wide mapping of histone H3 lysine 4 trimethylation in Eucalyptus grandis developing xylem.
Hussey SG; Mizrachi E; Groover A; Berger DK; Myburg AA
BMC Plant Biol; 2015 May; 15():117. PubMed ID: 25957781
[TBL] [Abstract][Full Text] [Related]
20. ChIP on chip and ChIP-Seq assays: genome-wide analysis of transcription factor binding and histone modifications.
Pillai S; Chellappan SP
Methods Mol Biol; 2015; 1288():447-72. PubMed ID: 25827896
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]