352 related articles for article (PubMed ID: 27587585)
21. Pathway projector: web-based zoomable pathway browser using KEGG atlas and Google Maps API.
Kono N; Arakawa K; Ogawa R; Kido N; Oshita K; Ikegami K; Tamaki S; Tomita M
PLoS One; 2009 Nov; 4(11):e7710. PubMed ID: 19907644
[TBL] [Abstract][Full Text] [Related]
22. Identification of Bona Fide RNA Editing Sites: History, Challenges, and Opportunities.
Tan MH
Acc Chem Res; 2023 Nov; 56(21):3033-3044. PubMed ID: 37827987
[TBL] [Abstract][Full Text] [Related]
23. A novel computational strategy to identify A-to-I RNA editing sites by RNA-Seq data: de novo detection in human spinal cord tissue.
Picardi E; Gallo A; Galeano F; Tomaselli S; Pesole G
PLoS One; 2012; 7(9):e44184. PubMed ID: 22957051
[TBL] [Abstract][Full Text] [Related]
24. ExpEdit: a webserver to explore human RNA editing in RNA-Seq experiments.
Picardi E; D'Antonio M; Carrabino D; Castrignanò T; Pesole G
Bioinformatics; 2011 May; 27(9):1311-2. PubMed ID: 21427194
[TBL] [Abstract][Full Text] [Related]
25. dbRES: a web-oriented database for annotated RNA editing sites.
He T; Du P; Li Y
Nucleic Acids Res; 2007 Jan; 35(Database issue):D141-4. PubMed ID: 17088288
[TBL] [Abstract][Full Text] [Related]
26. A-to-I RNA Editing Contributes to Proteomic Diversity in Cancer.
Peng X; Xu X; Wang Y; Hawke DH; Yu S; Han L; Zhou Z; Mojumdar K; Jeong KJ; Labrie M; Tsang YH; Zhang M; Lu Y; Hwu P; Scott KL; Liang H; Mills GB
Cancer Cell; 2018 May; 33(5):817-828.e7. PubMed ID: 29706454
[TBL] [Abstract][Full Text] [Related]
27. APAatlas: decoding alternative polyadenylation across human tissues.
Hong W; Ruan H; Zhang Z; Ye Y; Liu Y; Li S; Jing Y; Zhang H; Diao L; Liang H; Han L
Nucleic Acids Res; 2020 Jan; 48(D1):D34-D39. PubMed ID: 31586392
[TBL] [Abstract][Full Text] [Related]
28. CREDO: Highly confident disease-relevant A-to-I RNA-editing discovery in breast cancer.
Hwang W; Calza S; Silvestri M; Pawitan Y; Lee Y
Sci Rep; 2019 Mar; 9(1):5064. PubMed ID: 30911020
[TBL] [Abstract][Full Text] [Related]
29. Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables.
Giacopuzzi E; Gennarelli M; Sacco C; Filippini A; Mingardi J; Magri C; Barbon A
BMC Genomics; 2018 Dec; 19(1):963. PubMed ID: 30587120
[TBL] [Abstract][Full Text] [Related]
30. SliceIt: A genome-wide resource and visualization tool to design CRISPR/Cas9 screens for editing protein-RNA interaction sites in the human genome.
Vemuri S; Srivastava R; Mir Q; Hashemikhabir S; Dong XC; Janga SC
Methods; 2020 Jun; 178():104-113. PubMed ID: 31494246
[TBL] [Abstract][Full Text] [Related]
31. Setting up the JBrowse genome browser.
Skinner ME; Holmes IH
Curr Protoc Bioinformatics; 2010 Dec; Chapter 9():Unit 9.13. PubMed ID: 21154710
[TBL] [Abstract][Full Text] [Related]
32. JBrowse: a dynamic web platform for genome visualization and analysis.
Buels R; Yao E; Diesh CM; Hayes RD; Munoz-Torres M; Helt G; Goodstein DM; Elsik CG; Lewis SE; Stein L; Holmes IH
Genome Biol; 2016 Apr; 17():66. PubMed ID: 27072794
[TBL] [Abstract][Full Text] [Related]
33. REDIdb: an upgraded bioinformatics resource for organellar RNA editing sites.
Picardi E; Regina TM; Verbitskiy D; Brennicke A; Quagliariello C
Mitochondrion; 2011 Mar; 11(2):360-5. PubMed ID: 21059409
[TBL] [Abstract][Full Text] [Related]
34. Automated Isoform Diversity Detector (AIDD): a pipeline for investigating transcriptome diversity of RNA-seq data.
Plonski NM; Johnson E; Frederick M; Mercer H; Fraizer G; Meindl R; Casadesus G; Piontkivska H
BMC Bioinformatics; 2020 Dec; 21(Suppl 18):578. PubMed ID: 33375933
[TBL] [Abstract][Full Text] [Related]
35. ADeditome provides the genomic landscape of A-to-I RNA editing in Alzheimer's disease.
Wu S; Yang M; Kim P; Zhou X
Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33401309
[TBL] [Abstract][Full Text] [Related]
36. Systematic identification of A-to-I RNA editing in zebrafish development and adult organs.
Buchumenski I; Holler K; Appelbaum L; Eisenberg E; Junker JP; Levanon EY
Nucleic Acids Res; 2021 May; 49(8):4325-4337. PubMed ID: 33872356
[TBL] [Abstract][Full Text] [Related]
37. The landscape of the A-to-I RNA editome from 462 human genomes.
Ouyang Z; Ren C; Liu F; An G; Bo X; Shu W
Sci Rep; 2018 Aug; 8(1):12069. PubMed ID: 30104667
[TBL] [Abstract][Full Text] [Related]
38. Unveiling the functional and evolutionary landscape of RNA editing in chicken using genomics and transcriptomics.
Wang YM; Ye LQ; Wang MS; Zhang JJ; Khederzadeh S; Irwin DM; Ren XD; Zhang YP; Wu DD
Zool Res; 2022 Nov; 43(6):1011-1022. PubMed ID: 36266925
[TBL] [Abstract][Full Text] [Related]
39. Transcriptogenomics identification and characterization of RNA editing sites in human primary monocytes using high-depth next generation sequencing data.
Leong WM; Ripen AM; Mirsafian H; Mohamad SB; Merican AF
Genomics; 2019 Jul; 111(4):899-905. PubMed ID: 29885984
[TBL] [Abstract][Full Text] [Related]
40. Pan-RNA editing analysis of the bovine genome.
Cai W; Shi L; Cao M; Shen D; Li J; Zhang S; Song J
RNA Biol; 2021 Mar; 18(3):368-381. PubMed ID: 32794424
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]