339 related articles for article (PubMed ID: 27587586)
1. Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).
Langley AR; Gräf S; Smith JC; Krude T
Nucleic Acids Res; 2016 Dec; 44(21):10230-10247. PubMed ID: 27587586
[TBL] [Abstract][Full Text] [Related]
2. Determination of human DNA replication origin position and efficiency reveals principles of initiation zone organisation.
Guilbaud G; Murat P; Wilkes HS; Lerner LK; Sale JE; Krude T
Nucleic Acids Res; 2022 Jul; 50(13):7436-7450. PubMed ID: 35801867
[TBL] [Abstract][Full Text] [Related]
3. The chromatin environment shapes DNA replication origin organization and defines origin classes.
Cayrou C; Ballester B; Peiffer I; Fenouil R; Coulombe P; Andrau JC; van Helden J; Méchali M
Genome Res; 2015 Dec; 25(12):1873-85. PubMed ID: 26560631
[TBL] [Abstract][Full Text] [Related]
4. Genome-wide identification and characterization of replication origins by deep sequencing.
Xu J; Yanagisawa Y; Tsankov AM; Hart C; Aoki K; Kommajosyula N; Steinmann KE; Bochicchio J; Russ C; Regev A; Rando OJ; Nusbaum C; Niki H; Milos P; Weng Z; Rhind N
Genome Biol; 2012 Apr; 13(4):R27. PubMed ID: 22531001
[TBL] [Abstract][Full Text] [Related]
5. Bubble-seq analysis of the human genome reveals distinct chromatin-mediated mechanisms for regulating early- and late-firing origins.
Mesner LD; Valsakumar V; Cieslik M; Pickin R; Hamlin JL; Bekiranov S
Genome Res; 2013 Nov; 23(11):1774-88. PubMed ID: 23861383
[TBL] [Abstract][Full Text] [Related]
6. Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Dellino GI; Cittaro D; Piccioni R; Luzi L; Banfi S; Segalla S; Cesaroni M; Mendoza-Maldonado R; Giacca M; Pelicci PG
Genome Res; 2013 Jan; 23(1):1-11. PubMed ID: 23187890
[TBL] [Abstract][Full Text] [Related]
7. Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Besnard E; Babled A; Lapasset L; Milhavet O; Parrinello H; Dantec C; Marin JM; Lemaitre JM
Nat Struct Mol Biol; 2012 Aug; 19(8):837-44. PubMed ID: 22751019
[TBL] [Abstract][Full Text] [Related]
8. Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins.
Foulk MS; Urban JM; Casella C; Gerbi SA
Genome Res; 2015 May; 25(5):725-35. PubMed ID: 25695952
[TBL] [Abstract][Full Text] [Related]
9. G4 motifs affect origin positioning and efficiency in two vertebrate replicators.
Valton AL; Hassan-Zadeh V; Lema I; Boggetto N; Alberti P; Saintomé C; Riou JF; Prioleau MN
EMBO J; 2014 Apr; 33(7):732-46. PubMed ID: 24521668
[TBL] [Abstract][Full Text] [Related]
10. Mapping replication origin sequences in eukaryotic chromosomes.
Fu H; Besnard E; Desprat R; Ryan M; Kahli M; Lemaitre JM; Aladjem MI
Curr Protoc Cell Biol; 2014 Dec; 65():22.20.1-17. PubMed ID: 25447077
[TBL] [Abstract][Full Text] [Related]
11. The genetic landscape of origins of replication in P. falciparum.
Castellano CM; Lacroix L; Mathis E; Prorok P; Hennion M; Lopez-Rubio JJ; Méchali M; Gomes AR
Nucleic Acids Res; 2024 Jan; 52(2):660-676. PubMed ID: 38038269
[TBL] [Abstract][Full Text] [Related]
12. The dynamics of genome replication using deep sequencing.
Müller CA; Hawkins M; Retkute R; Malla S; Wilson R; Blythe MJ; Nakato R; Komata M; Shirahige K; de Moura AP; Nieduszynski CA
Nucleic Acids Res; 2014 Jan; 42(1):e3. PubMed ID: 24089142
[TBL] [Abstract][Full Text] [Related]
13. DamID-seq: Genome-wide Mapping of Protein-DNA Interactions by High Throughput Sequencing of Adenine-methylated DNA Fragments.
Wu F; Olson BG; Yao J
J Vis Exp; 2016 Jan; (107):e53620. PubMed ID: 26862720
[TBL] [Abstract][Full Text] [Related]
14. Quantitative, genome-wide analysis of eukaryotic replication initiation and termination.
McGuffee SR; Smith DJ; Whitehouse I
Mol Cell; 2013 Apr; 50(1):123-35. PubMed ID: 23562327
[TBL] [Abstract][Full Text] [Related]
15. Allele-specific analysis of DNA replication origins in mammalian cells.
Bartholdy B; Mukhopadhyay R; Lajugie J; Aladjem MI; Bouhassira EE
Nat Commun; 2015 May; 6():7051. PubMed ID: 25987481
[TBL] [Abstract][Full Text] [Related]
16. Genome-wide measurement of DNA replication fork directionality and quantification of DNA replication initiation and termination with Okazaki fragment sequencing.
Wu X; Liu Y; d'Aubenton-Carafa Y; Thermes C; Hyrien O; Chen CL; Petryk N
Nat Protoc; 2023 Apr; 18(4):1260-1295. PubMed ID: 36653528
[TBL] [Abstract][Full Text] [Related]
17. Evidence for sequential and increasing activation of replication origins along replication timing gradients in the human genome.
Guilbaud G; Rappailles A; Baker A; Chen CL; Arneodo A; Goldar A; d'Aubenton-Carafa Y; Thermes C; Audit B; Hyrien O
PLoS Comput Biol; 2011 Dec; 7(12):e1002322. PubMed ID: 22219720
[TBL] [Abstract][Full Text] [Related]
18. Genomic study of replication initiation in human chromosomes reveals the influence of transcription regulation and chromatin structure on origin selection.
Karnani N; Taylor CM; Malhotra A; Dutta A
Mol Biol Cell; 2010 Feb; 21(3):393-404. PubMed ID: 19955211
[TBL] [Abstract][Full Text] [Related]
19. High-resolution mapping, characterization, and optimization of autonomously replicating sequences in yeast.
Liachko I; Youngblood RA; Keich U; Dunham MJ
Genome Res; 2013 Apr; 23(4):698-704. PubMed ID: 23241746
[TBL] [Abstract][Full Text] [Related]
20. The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Picard F; Cadoret JC; Audit B; Arneodo A; Alberti A; Battail C; Duret L; Prioleau MN
PLoS Genet; 2014 May; 10(5):e1004282. PubMed ID: 24785686
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
