These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
7. Human interactome resource and gene set linkage analysis for the functional interpretation of biologically meaningful gene sets. Zhou X; Chen P; Wei Q; Shen X; Chen X Bioinformatics; 2013 Aug; 29(16):2024-31. PubMed ID: 23782618 [TBL] [Abstract][Full Text] [Related]
8. NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis. Sun D; Liu Y; Zhang XS; Wu LY BMC Syst Biol; 2017 Sep; 11(Suppl 4):75. PubMed ID: 28950861 [TBL] [Abstract][Full Text] [Related]
9. Analysis of sample set enrichment scores: assaying the enrichment of sets of genes for individual samples in genome-wide expression profiles. Edelman E; Porrello A; Guinney J; Balakumaran B; Bild A; Febbo PG; Mukherjee S Bioinformatics; 2006 Jul; 22(14):e108-16. PubMed ID: 16873460 [TBL] [Abstract][Full Text] [Related]
10. ADGO: analysis of differentially expressed gene sets using composite GO annotation. Nam D; Kim SB; Kim SK; Yang S; Kim SY; Chu IS Bioinformatics; 2006 Sep; 22(18):2249-53. PubMed ID: 16837524 [TBL] [Abstract][Full Text] [Related]
11. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud. Yang A; Troup M; Lin P; Ho JW Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200 [TBL] [Abstract][Full Text] [Related]
12. GSOAP: a tool for visualization of gene set over-representation analysis. Tokar T; Pastrello C; Jurisica I Bioinformatics; 2020 May; 36(9):2923-2925. PubMed ID: 31977031 [TBL] [Abstract][Full Text] [Related]
13. Regulatory motif finding by logic regression. Keles S; van der Laan MJ; Vulpe C Bioinformatics; 2004 Nov; 20(16):2799-811. PubMed ID: 15166027 [TBL] [Abstract][Full Text] [Related]
14. Comparative analysis of weighted gene co-expression networks in human and mouse. Eidsaa M; Stubbs L; Almaas E PLoS One; 2017; 12(11):e0187611. PubMed ID: 29161290 [TBL] [Abstract][Full Text] [Related]
15. CLOE: identification of putative functional relationships among genes by comparison of expression profiles between two species. Pellegrino M; Provero P; Silengo L; Di Cunto F BMC Bioinformatics; 2004 Nov; 5():179. PubMed ID: 15550177 [TBL] [Abstract][Full Text] [Related]
16. ARSyN: a method for the identification and removal of systematic noise in multifactorial time course microarray experiments. Nueda MJ; Ferrer A; Conesa A Biostatistics; 2012 Jul; 13(3):553-66. PubMed ID: 22085896 [TBL] [Abstract][Full Text] [Related]
17. orthAgogue: an agile tool for the rapid prediction of orthology relations. Ekseth OK; Kuiper M; Mironov V Bioinformatics; 2014 Mar; 30(5):734-6. PubMed ID: 24115168 [TBL] [Abstract][Full Text] [Related]
18. SimSeq: a nonparametric approach to simulation of RNA-sequence datasets. Benidt S; Nettleton D Bioinformatics; 2015 Jul; 31(13):2131-40. PubMed ID: 25725090 [TBL] [Abstract][Full Text] [Related]
19. Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge. Biehl M; Sadowski P; Bhanot G; Bilal E; Dayarian A; Meyer P; Norel R; Rhrissorrakrai K; Zeller MD; Hormoz S Bioinformatics; 2015 Feb; 31(4):453-61. PubMed ID: 24994890 [TBL] [Abstract][Full Text] [Related]
20. Integrated gene set analysis for microRNA studies. Garcia-Garcia F; Panadero J; Dopazo J; Montaner D Bioinformatics; 2016 Sep; 32(18):2809-16. PubMed ID: 27324197 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]