198 related articles for article (PubMed ID: 27587685)
21. MegaGTA: a sensitive and accurate metagenomic gene-targeted assembler using iterative de Bruijn graphs.
Li D; Huang Y; Leung CM; Luo R; Ting HF; Lam TW
BMC Bioinformatics; 2017 Oct; 18(Suppl 12):408. PubMed ID: 29072142
[TBL] [Abstract][Full Text] [Related]
22. Ray Meta: scalable de novo metagenome assembly and profiling.
Boisvert S; Raymond F; Godzaridis E; Laviolette F; Corbeil J
Genome Biol; 2012 Dec; 13(12):R122. PubMed ID: 23259615
[TBL] [Abstract][Full Text] [Related]
23. MOCAT2: a metagenomic assembly, annotation and profiling framework.
Kultima JR; Coelho LP; Forslund K; Huerta-Cepas J; Li SS; Driessen M; Voigt AY; Zeller G; Sunagawa S; Bork P
Bioinformatics; 2016 Aug; 32(16):2520-3. PubMed ID: 27153620
[TBL] [Abstract][Full Text] [Related]
24. Higher-order Markov models for metagenomic sequence classification.
Burks DJ; Azad RK
Bioinformatics; 2020 Aug; 36(14):4130-4136. PubMed ID: 32516355
[TBL] [Abstract][Full Text] [Related]
25. FragGeneScanRs: faster gene prediction for short reads.
Van der Jeugt F; Dawyndt P; Mesuere B
BMC Bioinformatics; 2022 May; 23(1):198. PubMed ID: 35643462
[TBL] [Abstract][Full Text] [Related]
26. Targeted domain assembly for fast functional profiling of metagenomic datasets with S3A.
David L; Vicedomini R; Richard H; Carbone A
Bioinformatics; 2020 Jul; 36(13):3975-3981. PubMed ID: 32330240
[TBL] [Abstract][Full Text] [Related]
27. DOE JGI Metagenome Workflow.
Clum A; Huntemann M; Bushnell B; Foster B; Foster B; Roux S; Hajek PP; Varghese N; Mukherjee S; Reddy TBK; Daum C; Yoshinaga Y; O'Malley R; Seshadri R; Kyrpides NC; Eloe-Fadrosh EA; Chen IA; Copeland A; Ivanova NN
mSystems; 2021 May; 6(3):. PubMed ID: 34006627
[TBL] [Abstract][Full Text] [Related]
28. SimkaMin: fast and resource frugal de novo comparative metagenomics.
Benoit G; Mariadassou M; Robin S; Schbath S; Peterlongo P; Lemaitre C
Bioinformatics; 2020 Feb; 36(4):1275-1276. PubMed ID: 31504187
[TBL] [Abstract][Full Text] [Related]
29. A de novo metagenomic assembly program for shotgun DNA reads.
Lai B; Ding R; Li Y; Duan L; Zhu H
Bioinformatics; 2012 Jun; 28(11):1455-62. PubMed ID: 22495746
[TBL] [Abstract][Full Text] [Related]
30. Simulating Illumina metagenomic data with InSilicoSeq.
Gourlé H; Karlsson-Lindsjö O; Hayer J; Bongcam-Rudloff E
Bioinformatics; 2019 Feb; 35(3):521-522. PubMed ID: 30016412
[TBL] [Abstract][Full Text] [Related]
31. GraftM: a tool for scalable, phylogenetically informed classification of genes within metagenomes.
Boyd JA; Woodcroft BJ; Tyson GW
Nucleic Acids Res; 2018 Jun; 46(10):e59. PubMed ID: 29562347
[TBL] [Abstract][Full Text] [Related]
32. phyloFlash: Rapid Small-Subunit rRNA Profiling and Targeted Assembly from Metagenomes.
Gruber-Vodicka HR; Seah BKB; Pruesse E
mSystems; 2020 Oct; 5(5):. PubMed ID: 33109753
[TBL] [Abstract][Full Text] [Related]
33. MetaPOAP: presence or absence of metabolic pathways in metagenome-assembled genomes.
Ward LM; Shih PM; Fischer WW
Bioinformatics; 2018 Dec; 34(24):4284-4286. PubMed ID: 29939199
[TBL] [Abstract][Full Text] [Related]
34. ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.
Kieser S; Brown J; Zdobnov EM; Trajkovski M; McCue LA
BMC Bioinformatics; 2020 Jun; 21(1):257. PubMed ID: 32571209
[TBL] [Abstract][Full Text] [Related]
35. UProC: tools for ultra-fast protein domain classification.
Meinicke P
Bioinformatics; 2015 May; 31(9):1382-8. PubMed ID: 25540185
[TBL] [Abstract][Full Text] [Related]
36. Indexed variation graphs for efficient and accurate resistome profiling.
Rowe WPM; Winn MD
Bioinformatics; 2018 Nov; 34(21):3601-3608. PubMed ID: 29762644
[TBL] [Abstract][Full Text] [Related]
37. MetaQUAST: evaluation of metagenome assemblies.
Mikheenko A; Saveliev V; Gurevich A
Bioinformatics; 2016 Apr; 32(7):1088-90. PubMed ID: 26614127
[TBL] [Abstract][Full Text] [Related]
38. Genovo: de novo assembly for metagenomes.
Laserson J; Jojic V; Koller D
J Comput Biol; 2011 Mar; 18(3):429-43. PubMed ID: 21385045
[TBL] [Abstract][Full Text] [Related]
39. aphid: an R package for analysis with profile hidden Markov models.
Wilkinson SP
Bioinformatics; 2019 Oct; 35(19):3829-3830. PubMed ID: 30840059
[TBL] [Abstract][Full Text] [Related]
40. Bambus 2: scaffolding metagenomes.
Koren S; Treangen TJ; Pop M
Bioinformatics; 2011 Nov; 27(21):2964-71. PubMed ID: 21926123
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]