These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

104 related articles for article (PubMed ID: 27595138)

  • 1. The Impact of RNA-seq Alignment Pipeline on Detection of Differentially Expressed Genes.
    Yang C; Wu PY; Phan JH; Wang MD
    IEEE Glob Conf Signal Inf Process; 2014 Dec; 2012():1376-1379. PubMed ID: 27595138
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The impact of RNA-seq aligners on gene expression estimation.
    Yang C; Wu PY; Tong L; Phan JH; Wang MD
    ACM BCB; 2015 Sep; 2015():462-471. PubMed ID: 27583310
    [TBL] [Abstract][Full Text] [Related]  

  • 3. ARPIR: automatic RNA-Seq pipelines with interactive report.
    Spinozzi G; Tini V; Adorni A; Falini B; Martelli MP
    BMC Bioinformatics; 2020 Dec; 21(Suppl 19):574. PubMed ID: 33349239
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Effect of low-expression gene filtering on detection of differentially expressed genes in RNA-seq data.
    Sha Y; Phan JH; Wang MD
    Annu Int Conf IEEE Eng Med Biol Soc; 2015; 2015():6461-4. PubMed ID: 26737772
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Performance evaluation of lossy quality compression algorithms for RNA-seq data.
    Yu R; Yang W; Wang S
    BMC Bioinformatics; 2020 Jul; 21(1):321. PubMed ID: 32689929
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Limitations of alignment-free tools in total RNA-seq quantification.
    Wu DC; Yao J; Ho KS; Lambowitz AM; Wilke CO
    BMC Genomics; 2018 Jul; 19(1):510. PubMed ID: 29969991
    [TBL] [Abstract][Full Text] [Related]  

  • 7. viGEN: An Open Source Pipeline for the Detection and Quantification of Viral RNA in Human Tumors.
    Bhuvaneshwar K; Song L; Madhavan S; Gusev Y
    Front Microbiol; 2018; 9():1172. PubMed ID: 29922260
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comparative study of RNA-Seq and microarray data analysis on the two examples of rectal-cancer patients and Burkitt Lymphoma cells.
    Wolff A; Bayerlová M; Gaedcke J; Kube D; Beißbarth T
    PLoS One; 2018; 13(5):e0197162. PubMed ID: 29768462
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Impact of RNA-seq data analysis algorithms on gene expression estimation and downstream prediction.
    Tong L; Wu PY; Phan JH; Hassazadeh HR; ; Tong W; Wang MD
    Sci Rep; 2020 Oct; 10(1):17925. PubMed ID: 33087762
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The Selection of Quantification Pipelines for Illumina RNA-seq Data Using a Subsampling Approach.
    Wu PY; Wang MD
    IEEE EMBS Int Conf Biomed Health Inform; 2016 Feb; 2016():78-81. PubMed ID: 28133637
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow.
    Lataretu M; Hölzer M
    Genes (Basel); 2020 Dec; 11(12):. PubMed ID: 33322033
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA-seq assistant: machine learning based methods to identify more transcriptional regulated genes.
    Wang L; Xi Y; Sung S; Qiao H
    BMC Genomics; 2018 Jul; 19(1):546. PubMed ID: 30029596
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Scavenger: A pipeline for recovery of unaligned reads utilising similarity with aligned reads.
    Yang A; Tang JYS; Troup M; Ho JWK
    F1000Res; 2019; 8():1587. PubMed ID: 32913631
    [TBL] [Abstract][Full Text] [Related]  

  • 14. CADBURE: A generic tool to evaluate the performance of spliced aligners on RNA-Seq data.
    Kumar PK; Hoang TV; Robinson ML; Tsonis PA; Liang C
    Sci Rep; 2015 Aug; 5():13443. PubMed ID: 26304587
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Identification of novel ΔNp63α-regulated miRNAs using an optimized small RNA-Seq analysis pipeline.
    Sakaram S; Craig MP; Hill NT; Aljagthmi A; Garrido C; Paliy O; Bottomley M; Raymer M; Kadakia MP
    Sci Rep; 2018 Jul; 8(1):10069. PubMed ID: 29968742
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Data Analysis Pipeline for RNA-seq Experiments: From Differential Expression to Cryptic Splicing.
    Yalamanchili HK; Wan YW; Liu Z
    Curr Protoc Bioinformatics; 2017 Sep; 59():11.15.1-11.15.21. PubMed ID: 28902396
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of methods for differential expression analysis on multi-group RNA-seq count data.
    Tang M; Sun J; Shimizu K; Kadota K
    BMC Bioinformatics; 2015 Nov; 16():361. PubMed ID: 26538400
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SeqAcademy: an educational pipeline for RNA-Seq and ChIP-Seq analysis.
    Ather SH; Awe OI; Butler TJ; Denka T; Semick SA; Tang W; Busby B
    F1000Res; 2018; 7():. PubMed ID: 33014338
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An automated RNA-Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells.
    Chen C; Le H; Goudar CT
    Biotechnol Prog; 2015; 31(5):1150-62. PubMed ID: 26150012
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Identifying suitable tools for variant detection and differential gene expression using RNA-seq data.
    Dharshini SAP; Taguchi YH; Gromiha MM
    Genomics; 2020 May; 112(3):2166-2172. PubMed ID: 31862361
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.