207 related articles for article (PubMed ID: 27605262)
1. Rare variant phasing and haplotypic expression from RNA sequencing with phASER.
Castel SE; Mohammadi P; Chung WK; Shen Y; Lappalainen T
Nat Commun; 2016 Sep; 7():12817. PubMed ID: 27605262
[TBL] [Abstract][Full Text] [Related]
2. A Long-Read Sequencing Approach for Direct Haplotype Phasing in Clinical Settings.
Maestri S; Maturo MG; Cosentino E; Marcolungo L; Iadarola B; Fortunati E; Rossato M; Delledonne M
Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271988
[TBL] [Abstract][Full Text] [Related]
3. HapCUT2: A Method for Phasing Genomes Using Experimental Sequence Data.
Bansal V
Methods Mol Biol; 2023; 2590():139-147. PubMed ID: 36335497
[TBL] [Abstract][Full Text] [Related]
4. Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.
Yang WY; Hormozdiari F; Wang Z; He D; Pasaniuc B; Eskin E
Bioinformatics; 2013 Sep; 29(18):2245-52. PubMed ID: 23825370
[TBL] [Abstract][Full Text] [Related]
5. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.
Bansal V
Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646
[TBL] [Abstract][Full Text] [Related]
6. HapIso: An Accurate Method for the Haplotype- Specific Isoforms Reconstruction From Long Single-Molecule Reads.
Mangul S; Yang TH; Hormozdiari F; Dainis AM; Tseng E; Ashley EA; Zelikovsky A; Eskin E
IEEE Trans Nanobioscience; 2017 Mar; 16(2):108-115. PubMed ID: 28328508
[TBL] [Abstract][Full Text] [Related]
7. Variant phasing and haplotypic expression from long-read sequencing in maize.
Wang B; Tseng E; Baybayan P; Eng K; Regulski M; Jiao Y; Wang L; Olson A; Chougule K; Buren PV; Ware D
Commun Biol; 2020 Feb; 3(1):78. PubMed ID: 32071408
[TBL] [Abstract][Full Text] [Related]
8. DCHap: A Divide-and-Conquer Haplotype Phasing Algorithm for Third-Generation Sequences.
Li Y; Lin Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1277-1284. PubMed ID: 32750878
[TBL] [Abstract][Full Text] [Related]
9. Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysis.
Lajugie J; Mukhopadhyay R; Schizas M; Lailler N; Fourel N; Bouhassira EE
PLoS One; 2013; 8(5):e64571. PubMed ID: 23741343
[TBL] [Abstract][Full Text] [Related]
10. Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome.
Wenger AM; Peluso P; Rowell WJ; Chang PC; Hall RJ; Concepcion GT; Ebler J; Fungtammasan A; Kolesnikov A; Olson ND; Töpfer A; Alonge M; Mahmoud M; Qian Y; Chin CS; Phillippy AM; Schatz MC; Myers G; DePristo MA; Ruan J; Marschall T; Sedlazeck FJ; Zook JM; Li H; Koren S; Carroll A; Rank DR; Hunkapiller MW
Nat Biotechnol; 2019 Oct; 37(10):1155-1162. PubMed ID: 31406327
[TBL] [Abstract][Full Text] [Related]
11. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture.
Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J
Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015
[TBL] [Abstract][Full Text] [Related]
12. Comparison of phasing strategies for whole human genomes.
Choi Y; Chan AP; Kirkness E; Telenti A; Schork NJ
PLoS Genet; 2018 Apr; 14(4):e1007308. PubMed ID: 29621242
[TBL] [Abstract][Full Text] [Related]
13. Rare variant phasing using paired tumor:normal sequence data.
Buckley AR; Ideker T; Carter H; Schork NJ
BMC Bioinformatics; 2019 May; 20(1):265. PubMed ID: 31132991
[TBL] [Abstract][Full Text] [Related]
14. PRINCESS: comprehensive detection of haplotype resolved SNVs, SVs, and methylation.
Mahmoud M; Doddapaneni H; Timp W; Sedlazeck FJ
Genome Biol; 2021 Sep; 22(1):268. PubMed ID: 34521442
[TBL] [Abstract][Full Text] [Related]
15. Haplotyping-Assisted Diploid Assembly and Variant Detection with Linked Reads.
Hu Y; Yang C; Zhang L; Zhou X
Methods Mol Biol; 2023; 2590():161-182. PubMed ID: 36335499
[TBL] [Abstract][Full Text] [Related]
16. SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases.
Hager P; Mewes HW; Rohlfs M; Klein C; Jeske T
PLoS Comput Biol; 2020 Feb; 16(2):e1007613. PubMed ID: 32032351
[TBL] [Abstract][Full Text] [Related]
17. Dense and accurate whole-chromosome haplotyping of individual genomes.
Porubsky D; Garg S; Sanders AD; Korbel JO; Guryev V; Lansdorp PM; Marschall T
Nat Commun; 2017 Nov; 8(1):1293. PubMed ID: 29101320
[TBL] [Abstract][Full Text] [Related]
18. Phasing for medical sequencing using rare variants and large haplotype reference panels.
Sharp K; Kretzschmar W; Delaneau O; Marchini J
Bioinformatics; 2016 Jul; 32(13):1974-80. PubMed ID: 27153703
[TBL] [Abstract][Full Text] [Related]
19. JAGuaR: junction alignments to genome for RNA-seq reads.
Butterfield YS; Kreitzman M; Thiessen N; Corbett RD; Li Y; Pang J; Ma YP; Jones SJ; Birol İ
PLoS One; 2014; 9(7):e102398. PubMed ID: 25062255
[TBL] [Abstract][Full Text] [Related]
20. Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing.
Stapleton JA; Kim J; Hamilton JP; Wu M; Irber LC; Maddamsetti R; Briney B; Newton L; Burton DR; Brown CT; Chan C; Buell CR; Whitehead TA
PLoS One; 2016; 11(1):e0147229. PubMed ID: 26789840
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
