These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

207 related articles for article (PubMed ID: 27605262)

  • 41. Towards accurate, contiguous and complete alignment-based polyploid phasing algorithms.
    Saada OA; Friedrich A; Schacherer J
    Genomics; 2022 May; 114(3):110369. PubMed ID: 35483655
    [TBL] [Abstract][Full Text] [Related]  

  • 42. Accurate rare variant phasing of whole-genome and whole-exome sequencing data in the UK Biobank.
    Hofmeister RJ; Ribeiro DM; Rubinacci S; Delaneau O
    Nat Genet; 2023 Jul; 55(7):1243-1249. PubMed ID: 37386248
    [TBL] [Abstract][Full Text] [Related]  

  • 43. Gel-seq: whole-genome and transcriptome sequencing by simultaneous low-input DNA and RNA library preparation using semi-permeable hydrogel barriers.
    Hoople GD; Richards A; Wu Y; Kaneko K; Luo X; Feng GS; Zhang K; Pisano AP
    Lab Chip; 2017 Jul; 17(15):2619-2630. PubMed ID: 28660979
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Direct haplotype-resolved 5-base HiFi sequencing for genome-wide profiling of hypermethylation outliers in a rare disease cohort.
    Cheung WA; Johnson AF; Rowell WJ; Farrow E; Hall R; Cohen ASA; Means JC; Zion TN; Portik DM; Saunders CT; Koseva B; Bi C; Truong TK; Schwendinger-Schreck C; Yoo B; Johnston JJ; Gibson M; Evrony G; Rizzo WB; Thiffault I; Younger ST; Curran T; Wenger AM; Grundberg E; Pastinen T
    Nat Commun; 2023 May; 14(1):3090. PubMed ID: 37248219
    [TBL] [Abstract][Full Text] [Related]  

  • 45. A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels.
    Faux P; Druet T
    Genet Sel Evol; 2017 May; 49(1):46. PubMed ID: 28511677
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Frequency-based haplotype reconstruction from deep sequencing data of bacterial populations.
    Pulido-Tamayo S; Sánchez-Rodríguez A; Swings T; Van den Bergh B; Dubey A; Steenackers H; Michiels J; Fostier J; Marchal K
    Nucleic Acids Res; 2015 Sep; 43(16):e105. PubMed ID: 25990729
    [TBL] [Abstract][Full Text] [Related]  

  • 47. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms.
    Patel A; Edge P; Selvaraj S; Bansal V; Bafna V
    Nucleic Acids Res; 2016 Jul; 44(12):e111. PubMed ID: 27105843
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Haplotype phasing: existing methods and new developments.
    Browning SR; Browning BL
    Nat Rev Genet; 2011 Sep; 12(10):703-14. PubMed ID: 21921926
    [TBL] [Abstract][Full Text] [Related]  

  • 49. piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.
    Han BW; Wang W; Zamore PD; Weng Z
    Bioinformatics; 2015 Feb; 31(4):593-5. PubMed ID: 25342065
    [TBL] [Abstract][Full Text] [Related]  

  • 50. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios.
    Miller DB; Piccolo SR
    BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Most brain disease-associated and eQTL haplotypes are not located within transcription factor DNase-seq footprints in brain.
    Handel AE; Gallone G; Zameel Cader M; Ponting CP
    Hum Mol Genet; 2017 Jan; 26(1):79-89. PubMed ID: 27798116
    [TBL] [Abstract][Full Text] [Related]  

  • 52. HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads.
    Nurk S; Walenz BP; Rhie A; Vollger MR; Logsdon GA; Grothe R; Miga KH; Eichler EE; Phillippy AM; Koren S
    Genome Res; 2020 Sep; 30(9):1291-1305. PubMed ID: 32801147
    [TBL] [Abstract][Full Text] [Related]  

  • 53. A customized scaffolds approach for the detection and phasing of complex variants by next-generation sequencing.
    Zeng Q; Leach NT; Zhou Z; Zhu H; Smith JA; Rosenblum LS; Kenyon A; Heim RA; Eisenberg M; Letovsky S; Okamoto PM
    Sci Rep; 2020 Sep; 10(1):15060. PubMed ID: 32929119
    [TBL] [Abstract][Full Text] [Related]  

  • 54. Chromosome-Length Haplotypes with StrandPhaseR and Strand-seq.
    Hanlon VCT; Porubsky D; Lansdorp PM
    Methods Mol Biol; 2023; 2590():183-200. PubMed ID: 36335500
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Accuracy of RNA-Seq and its dependence on sequencing depth.
    Cai G; Li H; Lu Y; Huang X; Lee J; Müller P; Ji Y; Liang S
    BMC Bioinformatics; 2012; 13 Suppl 13(Suppl 13):S5. PubMed ID: 23320920
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Accurate long-read sequencing allows assembly of the duplicated RHD and RHCE genes harboring variants relevant to blood transfusion.
    Zhang Z; An HH; Vege S; Hu T; Zhang S; Mosbruger T; Jayaraman P; Monos D; Westhoff CM; Chou ST
    Am J Hum Genet; 2022 Jan; 109(1):180-191. PubMed ID: 34968422
    [TBL] [Abstract][Full Text] [Related]  

  • 57. Fully phased human genome assembly without parental data using single-cell strand sequencing and long reads.
    Porubsky D; Ebert P; Audano PA; Vollger MR; Harvey WT; Marijon P; Ebler J; Munson KM; Sorensen M; Sulovari A; Haukness M; Ghareghani M; ; Lansdorp PM; Paten B; Devine SE; Sanders AD; Lee C; Chaisson MJP; Korbel JO; Eichler EE; Marschall T
    Nat Biotechnol; 2021 Mar; 39(3):302-308. PubMed ID: 33288906
    [TBL] [Abstract][Full Text] [Related]  

  • 58. RNA sequencing: from sample preparation to analysis.
    Maekawa S; Suzuki A; Sugano S; Suzuki Y
    Methods Mol Biol; 2014; 1164():51-65. PubMed ID: 24927835
    [TBL] [Abstract][Full Text] [Related]  

  • 59. A dynamic Bayesian Markov model for phasing and characterizing haplotypes in next-generation sequencing.
    Zhang Y
    Bioinformatics; 2013 Apr; 29(7):878-85. PubMed ID: 23407359
    [TBL] [Abstract][Full Text] [Related]  

  • 60. Transcriptome Sequencing: RNA-Seq.
    Zhang H; He L; Cai L
    Methods Mol Biol; 2018; 1754():15-27. PubMed ID: 29536435
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 11.