BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

96 related articles for article (PubMed ID: 27616709)

  • 1. D-VASim: an interactive virtual laboratory environment for the simulation and analysis of genetic circuits.
    Baig H; Madsen J
    Bioinformatics; 2017 Jan; 33(2):297-299. PubMed ID: 27616709
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A Parallel Approach to Perform Threshold Value and Propagation Delay Analyses of Genetic Logic Circuit Models.
    Sanaullah ; Baig H; Madsen J; Lee JA
    ACS Synth Biol; 2020 Dec; 9(12):3422-3428. PubMed ID: 33225698
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Simulation Approach for Timing Analysis of Genetic Logic Circuits.
    Baig H; Madsen J
    ACS Synth Biol; 2017 Jul; 6(7):1169-1179. PubMed ID: 28102666
    [TBL] [Abstract][Full Text] [Related]  

  • 4. libRoadRunner: a high performance SBML simulation and analysis library.
    Somogyi ET; Bouteiller JM; Glazier JA; König M; Medley JK; Swat MH; Sauro HM
    Bioinformatics; 2015 Oct; 31(20):3315-21. PubMed ID: 26085503
    [TBL] [Abstract][Full Text] [Related]  

  • 5. MONALISA for stochastic simulations of Petri net models of biochemical systems.
    Balazki P; Lindauer K; Einloft J; Ackermann J; Koch I
    BMC Bioinformatics; 2015 Jul; 16():215. PubMed ID: 26156221
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SBMLToolbox: an SBML toolbox for MATLAB users.
    Keating SM; Bornstein BJ; Finney A; Hucka M
    Bioinformatics; 2006 May; 22(10):1275-7. PubMed ID: 16574696
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.
    Sütterlin T; Kolb C; Dickhaus H; Jäger D; Grabe N
    Bioinformatics; 2013 Jan; 29(2):223-9. PubMed ID: 23162085
    [TBL] [Abstract][Full Text] [Related]  

  • 8. SBML2Modelica: integrating biochemical models within open-standard simulation ecosystems.
    Maggioli F; Mancini T; Tronci E
    Bioinformatics; 2020 Apr; 36(7):2165-2172. PubMed ID: 31738386
    [TBL] [Abstract][Full Text] [Related]  

  • 9. libRoadRunner 2.0: a high performance SBML simulation and analysis library.
    Welsh C; Xu J; Smith L; König M; Choi K; Sauro HM
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36478036
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SBML-PET: a Systems Biology Markup Language-based parameter estimation tool.
    Zi Z; Klipp E
    Bioinformatics; 2006 Nov; 22(21):2704-5. PubMed ID: 16926221
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ViSiBooL-visualization and simulation of Boolean networks with temporal constraints.
    Schwab J; Burkovski A; Siegle L; Müssel C; Kestler HA
    Bioinformatics; 2017 Feb; 33(4):601-604. PubMed ID: 27797768
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Modeling and simulation of biological systems using SPICE language.
    Madec M; Lallement C; Haiech J
    PLoS One; 2017; 12(8):e0182385. PubMed ID: 28787027
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Hybrid deterministic/stochastic simulation of complex biochemical systems.
    Lecca P; Bagagiolo F; Scarpa M
    Mol Biosyst; 2017 Nov; 13(12):2672-2686. PubMed ID: 29058744
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Rule-based modeling with Virtual Cell.
    Schaff JC; Vasilescu D; Moraru II; Loew LM; Blinov ML
    Bioinformatics; 2016 Sep; 32(18):2880-2. PubMed ID: 27497444
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SELANSI: a toolbox for simulation of stochastic gene regulatory networks.
    Pájaro M; Otero-Muras I; Vázquez C; Alonso AA
    Bioinformatics; 2018 Mar; 34(5):893-895. PubMed ID: 29040384
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Bio-Algorithmic Workflows for Standardized Synthetic Biology Constructs.
    Goñi-Moreno A; de Lorenzo V
    Methods Mol Biol; 2018; 1772():363-372. PubMed ID: 29754239
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Snoopy's hybrid simulator: a tool to construct and simulate hybrid biological models.
    Herajy M; Liu F; Rohr C; Heiner M
    BMC Syst Biol; 2017 Jul; 11(1):71. PubMed ID: 28754122
    [TBL] [Abstract][Full Text] [Related]  

  • 18. XitoSBML: A Modeling Tool for Creating Spatial Systems Biology Markup Language Models From Microscopic Images.
    Ii K; Mashimo K; Ozeki M; Yamada TG; Hiroi N; Funahashi A
    Front Genet; 2019; 10():1027. PubMed ID: 31749833
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Design and implementation of a tool for translating SBML into the biochemical stochastic pi-calculus.
    Eccher C; Priami C
    Bioinformatics; 2006 Dec; 22(24):3075-81. PubMed ID: 17046974
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient Analysis of Systems Biology Markup Language Models of Cellular Populations Using Arrays.
    Watanabe L; Myers CJ
    ACS Synth Biol; 2016 Aug; 5(8):835-41. PubMed ID: 26912276
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.