These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

158 related articles for article (PubMed ID: 27616867)

  • 1. Thermodynamic free energy methods to investigate shape transitions in bilayer membranes.
    Ramakrishnan N; Tourdot RW; Radhakrishnan R
    Int J Adv Eng Sci Appl Math; 2016 Jun; 8(2):88-100. PubMed ID: 27616867
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Defining the free-energy landscape of curvature-inducing proteins on membrane bilayers.
    Tourdot RW; Ramakrishnan N; Radhakrishnan R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2014 Aug; 90(2):022717. PubMed ID: 25215768
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Quantification of Curvature Sensing Behavior of Curvature-Inducing Proteins on Model Wavy Substrates.
    Tourdot RW; Ramakrishnan N; Parihar K; Radhakrishnan R
    J Membr Biol; 2022 Jun; 255(2-3):175-184. PubMed ID: 35333976
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Mesoscale computational studies of membrane bilayer remodeling by curvature-inducing proteins.
    Ramakrishnan N; Sunil Kumar PB; Radhakrishnan R
    Phys Rep; 2014 Oct; 543(1):1-60. PubMed ID: 25484487
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Application of a free-energy-landscape approach to study tension-dependent bilayer tubulation mediated by curvature-inducing proteins.
    Tourdot RW; Ramakrishnan N; Baumgart T; Radhakrishnan R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2015 Oct; 92(4):042715. PubMed ID: 26565280
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Comparison of the umbrella sampling and the double decoupling method in binding free energy predictions for SAMPL6 octa-acid host-guest challenges.
    Nishikawa N; Han K; Wu X; Tofoleanu F; Brooks BR
    J Comput Aided Mol Des; 2018 Oct; 32(10):1075-1086. PubMed ID: 30324304
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of efficiency and bias of free energies computed by exponential averaging, the Bennett acceptance ratio, and thermodynamic integration.
    Shirts MR; Pande VS
    J Chem Phys; 2005 Apr; 122(14):144107. PubMed ID: 15847516
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Suitability of umbrella- and overlap-sampling methods for calculation of solid-phase free energies by molecular simulation.
    Tan TB; Schultz AJ; Kofke DA
    J Chem Phys; 2010 Jun; 132(21):214103. PubMed ID: 20528014
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Ligand Binding Thermodynamic Cycles: Hysteresis, the Locally Weighted Histogram Analysis Method, and the Overlapping States Matrix.
    Cui D; Zhang BW; Tan Z; Levy RM
    J Chem Theory Comput; 2020 Jan; 16(1):67-79. PubMed ID: 31743019
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Bennett's acceptance ratio and histogram analysis methods enhanced by umbrella sampling along a reaction coordinate in configurational space.
    Kim I; Allen TW
    J Chem Phys; 2012 Apr; 136(16):164103. PubMed ID: 22559466
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Thermodynamic Size Control in Curvature-Frustrated Tubules: Self-Limitation with Open Boundaries.
    Tyukodi B; Mohajerani F; Hall DM; Grason GM; Hagan MF
    ACS Nano; 2022 Jun; 16(6):9077-9085. PubMed ID: 35638478
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Connecting free energy surfaces in implicit and explicit solvent: an efficient method to compute conformational and solvation free energies.
    Deng N; Zhang BW; Levy RM
    J Chem Theory Comput; 2015 Jun; 11(6):2868-78. PubMed ID: 26236174
    [TBL] [Abstract][Full Text] [Related]  

  • 13. On the Use of Enveloping Distribution Sampling (EDS) to Compute Free Enthalpy Differences between Different Conformational States of Molecules: Application to 310-, α-, and π-Helices.
    Lin Z; Liu H; Riniker S; van Gunsteren WF
    J Chem Theory Comput; 2011 Dec; 7(12):3884-97. PubMed ID: 26598335
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Calculation of binding free energies of inhibitors to plasmepsin II.
    Steiner D; Oostenbrink C; Diederich F; Zürcher M; van Gunsteren WF
    J Comput Chem; 2011 Jul; 32(9):1801-12. PubMed ID: 21488062
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Application of the weighted histogram method for calculating the thermodynamic parameters of the formation of oligodeoxyribonucleotide duplexes.
    Yushin II; Golyshev VM; Pyshnyi DV; Lomzov AA
    Vavilovskii Zhurnal Genet Selektsii; 2023 Dec; 27(7):807-814. PubMed ID: 38213713
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Free energy of formation of small ice nuclei near the Widom line in simulations of supercooled water.
    Buhariwalla CR; Bowles RK; Saika-Voivod I; Sciortino F; Poole PH
    Eur Phys J E Soft Matter; 2015 May; 38(5):124. PubMed ID: 25985943
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calculation of free energies in fluid membranes subject to heterogeneous curvature fields.
    Agrawal NJ; Radhakrishnan R
    Phys Rev E Stat Nonlin Soft Matter Phys; 2009 Jul; 80(1 Pt 1):011925. PubMed ID: 19658747
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Convergence and error estimation in free energy calculations using the weighted histogram analysis method.
    Zhu F; Hummer G
    J Comput Chem; 2012 Feb; 33(4):453-65. PubMed ID: 22109354
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Exploiting Lipid Permutation Symmetry to Compute Membrane Remodeling Free Energies.
    Bubnis G; Risselada HJ; Grubmüller H
    Phys Rev Lett; 2016 Oct; 117(18):188102. PubMed ID: 27834997
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Statistical thermodynamic analysis of peptide and protein insertion into lipid membranes.
    Ben-Shaul A; Ben-Tal N; Honig B
    Biophys J; 1996 Jul; 71(1):130-7. PubMed ID: 8804596
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.