495 related articles for article (PubMed ID: 27634932)
1. Co-regulation of paralog genes in the three-dimensional chromatin architecture.
Ibn-Salem J; Muro EM; Andrade-Navarro MA
Nucleic Acids Res; 2017 Jan; 45(1):81-91. PubMed ID: 27634932
[TBL] [Abstract][Full Text] [Related]
2. Analysis of the relationship between coexpression domains and chromatin 3D organization.
Soler-Oliva ME; Guerrero-Martínez JA; Bachetti V; Reyes JC
PLoS Comput Biol; 2017 Sep; 13(9):e1005708. PubMed ID: 28902867
[TBL] [Abstract][Full Text] [Related]
3. Evolutionary stability of topologically associating domains is associated with conserved gene regulation.
Krefting J; Andrade-Navarro MA; Ibn-Salem J
BMC Biol; 2018 Aug; 16(1):87. PubMed ID: 30086749
[TBL] [Abstract][Full Text] [Related]
4. Contribution of transposable elements and distal enhancers to evolution of human-specific features of interphase chromatin architecture in embryonic stem cells.
Glinsky GV
Chromosome Res; 2018 Mar; 26(1-2):61-84. PubMed ID: 29335803
[TBL] [Abstract][Full Text] [Related]
5. Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus.
Smith EM; Lajoie BR; Jain G; Dekker J
Am J Hum Genet; 2016 Jan; 98(1):185-201. PubMed ID: 26748519
[TBL] [Abstract][Full Text] [Related]
6. Genome-Wide Chromatin Structure Changes During Adipogenesis and Myogenesis.
He M; Li Y; Tang Q; Li D; Jin L; Tian S; Che T; He S; Deng L; Gao G; Gu Y; Jiang Z; Li X; Li M
Int J Biol Sci; 2018; 14(11):1571-1585. PubMed ID: 30263009
[TBL] [Abstract][Full Text] [Related]
7. 3D genome evolution and reorganization in the Drosophila melanogaster species group.
Torosin NS; Anand A; Golla TR; Cao W; Ellison CE
PLoS Genet; 2020 Dec; 16(12):e1009229. PubMed ID: 33284803
[TBL] [Abstract][Full Text] [Related]
8. Formation of new chromatin domains determines pathogenicity of genomic duplications.
Franke M; Ibrahim DM; Andrey G; Schwarzer W; Heinrich V; Schöpflin R; Kraft K; Kempfer R; Jerković I; Chan WL; Spielmann M; Timmermann B; Wittler L; Kurth I; Cambiaso P; Zuffardi O; Houge G; Lambie L; Brancati F; Pombo A; Vingron M; Spitz F; Mundlos S
Nature; 2016 Oct; 538(7624):265-269. PubMed ID: 27706140
[TBL] [Abstract][Full Text] [Related]
9. Practical Analysis of Genome Contact Interaction Experiments.
Carty MA; Elemento O
Methods Mol Biol; 2016; 1418():177-89. PubMed ID: 27008015
[TBL] [Abstract][Full Text] [Related]
10. Modelling genome-wide topological associating domains in mouse embryonic stem cells.
Zhan Y; Giorgetti L; Tiana G
Chromosome Res; 2017 Mar; 25(1):5-14. PubMed ID: 28108933
[TBL] [Abstract][Full Text] [Related]
11. Evolutionary comparison reveals that diverging CTCF sites are signatures of ancestral topological associating domains borders.
Gómez-Marín C; Tena JJ; Acemel RD; López-Mayorga M; Naranjo S; de la Calle-Mustienes E; Maeso I; Beccari L; Aneas I; Vielmas E; Bovolenta P; Nobrega MA; Carvajal J; Gómez-Skarmeta JL
Proc Natl Acad Sci U S A; 2015 Jun; 112(24):7542-7. PubMed ID: 26034287
[TBL] [Abstract][Full Text] [Related]
12. Three-dimensional disorganization of the cancer genome occurs coincident with long-range genetic and epigenetic alterations.
Taberlay PC; Achinger-Kawecka J; Lun AT; Buske FA; Sabir K; Gould CM; Zotenko E; Bert SA; Giles KA; Bauer DC; Smyth GK; Stirzaker C; O'Donoghue SI; Clark SJ
Genome Res; 2016 Jun; 26(6):719-31. PubMed ID: 27053337
[TBL] [Abstract][Full Text] [Related]
13. The global and promoter-centric 3D genome organization temporally resolved during a circadian cycle.
Furlan-Magaril M; Ando-Kuri M; Arzate-Mejía RG; Morf J; Cairns J; Román-Figueroa A; Tenorio-Hernández L; Poot-Hernández AC; Andrews S; Várnai C; Virk B; Wingett SW; Fraser P
Genome Biol; 2021 Jun; 22(1):162. PubMed ID: 34099014
[TBL] [Abstract][Full Text] [Related]
14. Promoter-enhancer interactions identified from Hi-C data using probabilistic models and hierarchical topological domains.
Ron G; Globerson Y; Moran D; Kaplan T
Nat Commun; 2017 Dec; 8(1):2237. PubMed ID: 29269730
[TBL] [Abstract][Full Text] [Related]
15. The effects of common structural variants on 3D chromatin structure.
Shanta O; Noor A; ; Sebat J
BMC Genomics; 2020 Jan; 21(1):95. PubMed ID: 32000688
[TBL] [Abstract][Full Text] [Related]
16. Making sense of the linear genome, gene function and TADs.
Long HS; Greenaway S; Powell G; Mallon AM; Lindgren CM; Simon MM
Epigenetics Chromatin; 2022 Jan; 15(1):4. PubMed ID: 35090532
[TBL] [Abstract][Full Text] [Related]
17. Minor Loops in Major Folds: Enhancer-Promoter Looping, Chromatin Restructuring, and Their Association with Transcriptional Regulation and Disease.
Matharu N; Ahituv N
PLoS Genet; 2015 Dec; 11(12):e1005640. PubMed ID: 26632825
[TBL] [Abstract][Full Text] [Related]
18. The distributions of protein coding genes within chromatin domains in relation to human disease.
Muro EM; Ibn-Salem J; Andrade-Navarro MA
Epigenetics Chromatin; 2019 Dec; 12(1):72. PubMed ID: 31805995
[TBL] [Abstract][Full Text] [Related]
19. ClusterTAD: an unsupervised machine learning approach to detecting topologically associated domains of chromosomes from Hi-C data.
Oluwadare O; Cheng J
BMC Bioinformatics; 2017 Nov; 18(1):480. PubMed ID: 29137603
[TBL] [Abstract][Full Text] [Related]
20. Evolutionary analysis of gene ages across TADs associates chromatin topology with whole-genome duplications.
James C; Trevisan-Herraz M; Juan D; Rico D
Cell Rep; 2024 Apr; 43(4):113895. PubMed ID: 38517894
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]