169 related articles for article (PubMed ID: 27634951)
1. BOSS: a novel scaffolding algorithm based on an optimized scaffold graph.
Luo J; Wang J; Zhang Z; Li M; Wu FX
Bioinformatics; 2017 Jan; 33(2):169-176. PubMed ID: 27634951
[TBL] [Abstract][Full Text] [Related]
2. SCOP: a novel scaffolding algorithm based on contig classification and optimization.
Li M; Tang L; Wu FX; Pan Y; Wang J
Bioinformatics; 2019 Apr; 35(7):1142-1150. PubMed ID: 30184046
[TBL] [Abstract][Full Text] [Related]
3. ScaffMatch: scaffolding algorithm based on maximum weight matching.
Mandric I; Zelikovsky A
Bioinformatics; 2015 Aug; 31(16):2632-8. PubMed ID: 25890305
[TBL] [Abstract][Full Text] [Related]
4. SLR: a scaffolding algorithm based on long reads and contig classification.
Luo J; Lyu M; Chen R; Zhang X; Luo H; Yan C
BMC Bioinformatics; 2019 Oct; 20(1):539. PubMed ID: 31666010
[TBL] [Abstract][Full Text] [Related]
5. SLHSD: hybrid scaffolding method based on short and long reads.
Luo J; Guan T; Chen G; Yu Z; Zhai H; Yan C; Luo H
Brief Bioinform; 2023 May; 24(3):. PubMed ID: 37141142
[TBL] [Abstract][Full Text] [Related]
6. SGTK: a toolkit for visualization and assessment of scaffold graphs.
Kunyavskaya O; Prjibelski AD
Bioinformatics; 2019 Jul; 35(13):2303-2305. PubMed ID: 30475983
[TBL] [Abstract][Full Text] [Related]
7. EPGA: de novo assembly using the distributions of reads and insert size.
Luo J; Wang J; Zhang Z; Wu FX; Li M; Pan Y
Bioinformatics; 2015 Mar; 31(6):825-33. PubMed ID: 25406329
[TBL] [Abstract][Full Text] [Related]
8. A comprehensive evaluation of assembly scaffolding tools.
Hunt M; Newbold C; Berriman M; Otto TD
Genome Biol; 2014 Mar; 15(3):R42. PubMed ID: 24581555
[TBL] [Abstract][Full Text] [Related]
9. CSAR: a contig scaffolding tool using algebraic rearrangements.
Chen KT; Liu CL; Huang SH; Shen HT; Shieh YK; Chiu HT; Lu CL
Bioinformatics; 2018 Jan; 34(1):109-111. PubMed ID: 28968788
[TBL] [Abstract][Full Text] [Related]
10. ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution.
Li M; Liao Z; He Y; Wang J; Luo J; Pan Y
IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(4):916-925. PubMed ID: 27076460
[TBL] [Abstract][Full Text] [Related]
11. GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
Gritsenko AA; Nijkamp JF; Reinders MJ; de Ridder D
Bioinformatics; 2012 Jun; 28(11):1429-37. PubMed ID: 22492642
[TBL] [Abstract][Full Text] [Related]
12. Repeat-aware evaluation of scaffolding tools.
Mandric I; Knyazev S; Zelikovsky A
Bioinformatics; 2018 Aug; 34(15):2530-2537. PubMed ID: 29547882
[TBL] [Abstract][Full Text] [Related]
13. Multi-CAR: a tool of contig scaffolding using multiple references.
Chen KT; Chen CJ; Shen HT; Liu CL; Huang SH; Lu CL
BMC Bioinformatics; 2016 Dec; 17(Suppl 17):469. PubMed ID: 28155633
[TBL] [Abstract][Full Text] [Related]
14. EPGA2: memory-efficient de novo assembler.
Luo J; Wang J; Li W; Zhang Z; Wu FX; Li M; Pan Y
Bioinformatics; 2015 Dec; 31(24):3988-90. PubMed ID: 26315905
[TBL] [Abstract][Full Text] [Related]
15. SeedsGraph: an efficient assembler for next-generation sequencing data.
Wang C; Guo M; Liu X; Liu Y; Zou Q
BMC Med Genomics; 2015; 8 Suppl 2(Suppl 2):S13. PubMed ID: 26044652
[TBL] [Abstract][Full Text] [Related]
16. SOPRA: Scaffolding algorithm for paired reads via statistical optimization.
Dayarian A; Michael TP; Sengupta AM
BMC Bioinformatics; 2010 Jun; 11():345. PubMed ID: 20576136
[TBL] [Abstract][Full Text] [Related]
17. RegScaf: a regression approach to scaffolding.
Li M; Li LM
Bioinformatics; 2022 May; 38(10):2675-2682. PubMed ID: 35561180
[TBL] [Abstract][Full Text] [Related]
18. The combination of direct and paired link graphs can boost repetitive genome assembly.
Shi W; Ji P; Zhao F
Nucleic Acids Res; 2017 Apr; 45(6):e43. PubMed ID: 27924003
[TBL] [Abstract][Full Text] [Related]
19. GapFiller: a de novo assembly approach to fill the gap within paired reads.
Nadalin F; Vezzi F; Policriti A
BMC Bioinformatics; 2012; 13 Suppl 14(Suppl 14):S8. PubMed ID: 23095524
[TBL] [Abstract][Full Text] [Related]
20. PEP_scaffolder: using (homologous) proteins to scaffold genomes.
Zhu BH; Song YN; Xue W; Xu GC; Xiao J; Sun MY; Sun XW; Li JT
Bioinformatics; 2016 Oct; 32(20):3193-3195. PubMed ID: 27334475
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
