151 related articles for article (PubMed ID: 27640904)
1. Intelligent Mixing of Proteomes for Elimination of False Positives in Affinity Purification-Mass Spectrometry.
Eyckerman S; Impens F; Van Quickelberghe E; Samyn N; Vandemoortele G; De Sutter D; Tavernier J; Gevaert K
J Proteome Res; 2016 Oct; 15(10):3929-3937. PubMed ID: 27640904
[TBL] [Abstract][Full Text] [Related]
2. Identifying novel protein complexes in cancer cells using epitope-tagging of endogenous human genes and affinity-purification mass spectrometry.
Song J; Hao Y; Du Z; Wang Z; Ewing RM
J Proteome Res; 2012 Dec; 11(12):5630-41. PubMed ID: 23106643
[TBL] [Abstract][Full Text] [Related]
3. Mapping Protein-Protein Interactions Using Affinity Purification and Mass Spectrometry.
Lee CM; Adamchek C; Feke A; Nusinow DA; Gendron JM
Methods Mol Biol; 2017; 1610():231-249. PubMed ID: 28439867
[TBL] [Abstract][Full Text] [Related]
4. Resolving protein interactions and complexes by affinity purification followed by label-based quantitative mass spectrometry.
Trinkle-Mulcahy L
Proteomics; 2012 May; 12(10):1623-38. PubMed ID: 22610586
[TBL] [Abstract][Full Text] [Related]
5. Identifying specific protein interaction partners using quantitative mass spectrometry and bead proteomes.
Trinkle-Mulcahy L; Boulon S; Lam YW; Urcia R; Boisvert FM; Vandermoere F; Morrice NA; Swift S; Rothbauer U; Leonhardt H; Lamond A
J Cell Biol; 2008 Oct; 183(2):223-39. PubMed ID: 18936248
[TBL] [Abstract][Full Text] [Related]
6. Identification of Protein Interaction Partners in Bacteria Using Affinity Purification and SILAC Quantitative Proteomics.
Kopeckova M; Link M; Pavkova I
Methods Mol Biol; 2023; 2603():31-42. PubMed ID: 36370268
[TBL] [Abstract][Full Text] [Related]
7. An integrated mass spectrometry-based proteomic approach: quantitative analysis of tandem affinity-purified in vivo cross-linked protein complexes (QTAX) to decipher the 26 S proteasome-interacting network.
Guerrero C; Tagwerker C; Kaiser P; Huang L
Mol Cell Proteomics; 2006 Feb; 5(2):366-78. PubMed ID: 16284124
[TBL] [Abstract][Full Text] [Related]
8. ROCS: a reproducibility index and confidence score for interaction proteomics studies.
Dazard JE; Saha S; Ewing RM
BMC Bioinformatics; 2012 Jun; 13():128. PubMed ID: 22682516
[TBL] [Abstract][Full Text] [Related]
9. Identification and Quantification of Affinity-Purified Proteins with MaxQuant, Followed by the Discrimination of Nonspecific Interactions with the CRAPome Interface.
Lee PY; Low TY
Methods Mol Biol; 2023; 2690():299-310. PubMed ID: 37450156
[TBL] [Abstract][Full Text] [Related]
10. Assignment of protein interactions from affinity purification/mass spectrometry data.
Pardo M; Choudhary JS
J Proteome Res; 2012 Mar; 11(3):1462-74. PubMed ID: 22283744
[TBL] [Abstract][Full Text] [Related]
11. The CRAPome: a contaminant repository for affinity purification-mass spectrometry data.
Mellacheruvu D; Wright Z; Couzens AL; Lambert JP; St-Denis NA; Li T; Miteva YV; Hauri S; Sardiu ME; Low TY; Halim VA; Bagshaw RD; Hubner NC; Al-Hakim A; Bouchard A; Faubert D; Fermin D; Dunham WH; Goudreault M; Lin ZY; Badillo BG; Pawson T; Durocher D; Coulombe B; Aebersold R; Superti-Furga G; Colinge J; Heck AJ; Choi H; Gstaiger M; Mohammed S; Cristea IM; Bennett KL; Washburn MP; Raught B; Ewing RM; Gingras AC; Nesvizhskii AI
Nat Methods; 2013 Aug; 10(8):730-6. PubMed ID: 23921808
[TBL] [Abstract][Full Text] [Related]
12. Benchmarking stable isotope labeling based quantitative proteomics.
Altelaar AF; Frese CK; Preisinger C; Hennrich ML; Schram AW; Timmers HT; Heck AJ; Mohammed S
J Proteomics; 2013 Aug; 88():14-26. PubMed ID: 23085607
[TBL] [Abstract][Full Text] [Related]
13. Combined proximity labeling and affinity purification-mass spectrometry workflow for mapping and visualizing protein interaction networks.
Liu X; Salokas K; Weldatsadik RG; Gawriyski L; Varjosalo M
Nat Protoc; 2020 Oct; 15(10):3182-3211. PubMed ID: 32778839
[TBL] [Abstract][Full Text] [Related]
14. Quantitative proteomics reveals regulation of dynamic components within TATA-binding protein (TBP) transcription complexes.
Mousson F; Kolkman A; Pijnappel WW; Timmers HT; Heck AJ
Mol Cell Proteomics; 2008 May; 7(5):845-52. PubMed ID: 18087068
[TBL] [Abstract][Full Text] [Related]
15. Proteomic navigation using proximity-labeling.
Gentzel M; Pardo M; Subramaniam S; Stewart AF; Choudhary JS
Methods; 2019 Jul; 164-165():67-72. PubMed ID: 30953756
[TBL] [Abstract][Full Text] [Related]
16. Accurate protein complex retrieval by affinity enrichment mass spectrometry (AE-MS) rather than affinity purification mass spectrometry (AP-MS).
Keilhauer EC; Hein MY; Mann M
Mol Cell Proteomics; 2015 Jan; 14(1):120-35. PubMed ID: 25363814
[TBL] [Abstract][Full Text] [Related]
17. Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system.
Hildebrandt A; Alanis-Lobato G; Voigt A; Zarnack K; Andrade-Navarro MA; Beli P; König J
Sci Rep; 2017 Nov; 7(1):16582. PubMed ID: 29185492
[TBL] [Abstract][Full Text] [Related]
18. Using affinity purification coupled with stable isotope labeling by amino acids in cell culture quantitative mass spectrometry to identify novel interactors/substrates of protein arginine methyltransferases.
Morettin A; Bourassa J; Mahadevan K; Trinkle-Mulcahy L; Cote J
Methods; 2020 Mar; 175():44-52. PubMed ID: 31794835
[TBL] [Abstract][Full Text] [Related]
19. Considerations for Identifying Endogenous Protein Complexes from Tissue via Immunoaffinity Purification and Quantitative Mass Spectrometry.
Federspiel JD; Cristea IM
Methods Mol Biol; 2019; 1977():115-143. PubMed ID: 30980326
[TBL] [Abstract][Full Text] [Related]
20. Stable isotope labeling with amino acids in cell culture based mass spectrometry approach to detect transient protein interactions using substrate trapping.
Thomas SN; Wan Y; Liao Z; Hanson PI; Yang AJ
Anal Chem; 2011 Jul; 83(14):5511-8. PubMed ID: 21619060
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
