These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

157 related articles for article (PubMed ID: 27659451)

  • 21. Rapid identification of somatic mutations in colorectal and breast cancer tissues using mismatch repair detection (MRD).
    Bentivegna S; Zheng J; Namsaraev E; Carlton VE; Pavlicek A; Moorhead M; Siddiqui F; Wang Z; Lee L; Ireland JS; Suyenaga K; Willis TD; Faham M; Seymour AB
    Hum Mutat; 2008 Mar; 29(3):441-50. PubMed ID: 18186519
    [TBL] [Abstract][Full Text] [Related]  

  • 22. A new correlation clustering method for cancer mutation analysis.
    Hou JP; Emad A; Puleo GJ; Ma J; Milenkovic O
    Bioinformatics; 2016 Dec; 32(24):3717-3728. PubMed ID: 27540270
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Computational identification of micro-structural variations and their proteogenomic consequences in cancer.
    Lin YY; Gawronski A; Hach F; Li S; Numanagic I; Sarrafi I; Mishra S; McPherson A; Collins CC; Radovich M; Tang H; Sahinalp SC
    Bioinformatics; 2018 May; 34(10):1672-1681. PubMed ID: 29267878
    [TBL] [Abstract][Full Text] [Related]  

  • 24. OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps.
    Li L; Leung AK; Kwok TP; Lai YYY; Pang IK; Chung GT; Mak ACY; Poon A; Chu C; Li M; Wu JJK; Lam ET; Cao H; Lin C; Sibert J; Yiu SM; Xiao M; Lo KW; Kwok PY; Chan TF; Yip KY
    Genome Biol; 2017 Dec; 18(1):230. PubMed ID: 29195502
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Global analysis of somatic structural genomic alterations and their impact on gene expression in diverse human cancers.
    Alaei-Mahabadi B; Bhadury J; Karlsson JW; Nilsson JA; Larsson E
    Proc Natl Acad Sci U S A; 2016 Nov; 113(48):13768-13773. PubMed ID: 27856756
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Identifying structural variants using linked-read sequencing data.
    Elyanow R; Wu HT; Raphael BJ
    Bioinformatics; 2018 Jan; 34(2):353-360. PubMed ID: 29112732
    [TBL] [Abstract][Full Text] [Related]  

  • 27. SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.
    Kockan C; Hach F; Sarrafi I; Bell RH; McConeghy B; Beja K; Haegert A; Wyatt AW; Volik SV; Chi KN; Collins CC; Sahinalp SC
    Bioinformatics; 2017 Jan; 33(1):26-34. PubMed ID: 27531099
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing.
    Yost SE; Alakus H; Matsui H; Schwab RB; Jepsen K; Frazer KA; Harismendy O
    Bioinformatics; 2013 Aug; 29(15):1908-9. PubMed ID: 23712659
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Allele-Specific Quantification of Structural Variations in Cancer Genomes.
    Li Y; Zhou S; Schwartz DC; Ma J
    Cell Syst; 2016 Jul; 3(1):21-34. PubMed ID: 27453446
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Long-read sequencing identifies novel structural variations in colorectal cancer.
    Xu L; Wang X; Lu X; Liang F; Liu Z; Zhang H; Li X; Tian S; Wang L; Wang Z
    PLoS Genet; 2023 Feb; 19(2):e1010514. PubMed ID: 36812239
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Structural variation discovery in the cancer genome using next generation sequencing: computational solutions and perspectives.
    Liu B; Conroy JM; Morrison CD; Odunsi AO; Qin M; Wei L; Trump DL; Johnson CS; Liu S; Wang J
    Oncotarget; 2015 Mar; 6(8):5477-89. PubMed ID: 25849937
    [TBL] [Abstract][Full Text] [Related]  

  • 32. ISOWN: accurate somatic mutation identification in the absence of normal tissue controls.
    Kalatskaya I; Trinh QM; Spears M; McPherson JD; Bartlett JMS; Stein L
    Genome Med; 2017 Jun; 9(1):59. PubMed ID: 28659176
    [TBL] [Abstract][Full Text] [Related]  

  • 33. DeepSom: a CNN-based approach to somatic variant calling in WGS samples without a matched normal.
    Vilov S; Heinig M
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36637201
    [TBL] [Abstract][Full Text] [Related]  

  • 34. isma: an R package for the integrative analysis of mutations detected by multiple pipelines.
    Di Nanni N; Moscatelli M; Gnocchi M; Milanesi L; Mosca E
    BMC Bioinformatics; 2019 Feb; 20(1):107. PubMed ID: 30819096
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Comprehensive long-span paired-end-tag mapping reveals characteristic patterns of structural variations in epithelial cancer genomes.
    Hillmer AM; Yao F; Inaki K; Lee WH; Ariyaratne PN; Teo AS; Woo XY; Zhang Z; Zhao H; Ukil L; Chen JP; Zhu F; So JB; Salto-Tellez M; Poh WT; Zawack KF; Nagarajan N; Gao S; Li G; Kumar V; Lim HP; Sia YY; Chan CS; Leong ST; Neo SC; Choi PS; Thoreau H; Tan PB; Shahab A; Ruan X; Bergh J; Hall P; Cacheux-Rataboul V; Wei CL; Yeoh KG; Sung WK; Bourque G; Liu ET; Ruan Y
    Genome Res; 2011 May; 21(5):665-75. PubMed ID: 21467267
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Genome U-Plot: a whole genome visualization.
    Gaitatzes A; Johnson SH; Smadbeck JB; Vasmatzis G
    Bioinformatics; 2018 May; 34(10):1629-1634. PubMed ID: 29281001
    [TBL] [Abstract][Full Text] [Related]  

  • 37. MetaSV: an accurate and integrative structural-variant caller for next generation sequencing.
    Mohiyuddin M; Mu JC; Li J; Bani Asadi N; Gerstein MB; Abyzov A; Wong WH; Lam HY
    Bioinformatics; 2015 Aug; 31(16):2741-4. PubMed ID: 25861968
    [TBL] [Abstract][Full Text] [Related]  

  • 38. The use of FNA samples for whole-exome sequencing and detection of somatic mutations in breast cancer surgical specimens.
    Lee HB; Joung JG; Kim J; Lee KM; Ryu HS; Lee HO; Moon HG; Park WY; Noh DY; Han W
    Cancer Cytopathol; 2015 Nov; 123(11):669-77. PubMed ID: 26265110
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Structural Variant Breakpoint Detection with novoBreak.
    Chong Z; Chen K
    Methods Mol Biol; 2018; 1833():129-141. PubMed ID: 30039369
    [TBL] [Abstract][Full Text] [Related]  

  • 40. FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data.
    Wang W; Wang P; Xu F; Luo R; Wong MP; Lam TW; Wang J
    Bioinformatics; 2014 Sep; 30(17):2498-500. PubMed ID: 24833803
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.