These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

401 related articles for article (PubMed ID: 27662878)

  • 1. Bioinformatics Pipeline for Transcriptome Sequencing Analysis.
    Djebali S; Wucher V; Foissac S; Hitte C; Corre E; Derrien T
    Methods Mol Biol; 2017; 1468():201-19. PubMed ID: 27662878
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Guide for Designing and Analyzing RNA-Seq Data.
    Chatterjee A; Ahn A; Rodger EJ; Stockwell PA; Eccles MR
    Methods Mol Biol; 2018; 1783():35-80. PubMed ID: 29767357
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Analysis of RNA-Seq Data Using TopHat and Cufflinks.
    Ghosh S; Chan CK
    Methods Mol Biol; 2016; 1374():339-61. PubMed ID: 26519415
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A Bioinformatics Pipeline for the Identification of CHO Cell Differential Gene Expression from RNA-Seq Data.
    Monger C; Motheramgari K; McSharry J; Barron N; Clarke C
    Methods Mol Biol; 2017; 1603():169-186. PubMed ID: 28493130
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis of EBV Transcription Using High-Throughput RNA Sequencing.
    O'Grady T; Baddoo M; Flemington EK
    Methods Mol Biol; 2017; 1532():105-121. PubMed ID: 27873270
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Quantitative transcriptome analysis using RNA-seq.
    Külahoglu C; Bräutigam A
    Methods Mol Biol; 2014; 1158():71-91. PubMed ID: 24792045
    [TBL] [Abstract][Full Text] [Related]  

  • 8. High Throughput Sequencing-Based Approaches for Gene Expression Analysis.
    Reddy RRS; Ramanujam MV
    Methods Mol Biol; 2018; 1783():299-323. PubMed ID: 29767369
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Optimizing RNA-Seq Mapping with STAR.
    Dobin A; Gingeras TR
    Methods Mol Biol; 2016; 1415():245-62. PubMed ID: 27115637
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA-Seq-Based Comparative Transcriptomics: RNA Preparation and Bioinformatics.
    Rodríguez-García A; Sola-Landa A; Barreiro C
    Methods Mol Biol; 2017; 1645():59-72. PubMed ID: 28710621
    [TBL] [Abstract][Full Text] [Related]  

  • 11. RNA-Seq as a Tool to Study the Tumor Microenvironment.
    Panichnantakul P; Bourgey M; Montpetit A; Bourque G; Riazalhosseini Y
    Methods Mol Biol; 2016; 1458():311-37. PubMed ID: 27581031
    [TBL] [Abstract][Full Text] [Related]  

  • 12. RNA-Seq Experiment and Data Analysis.
    Liang H; Zeng E
    Methods Mol Biol; 2016; 1366():99-114. PubMed ID: 26585130
    [TBL] [Abstract][Full Text] [Related]  

  • 13. RNA-seq: Basic Bioinformatics Analysis.
    Ji F; Sadreyev RI
    Curr Protoc Mol Biol; 2018 Oct; 124(1):e68. PubMed ID: 30222249
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Bridger: a new framework for de novo transcriptome assembly using RNA-seq data.
    Chang Z; Li G; Liu J; Zhang Y; Ashby C; Liu D; Cramer CL; Huang X
    Genome Biol; 2015 Feb; 16(1):30. PubMed ID: 25723335
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular Profiling of RNA Tumors Using High-Throughput RNA Sequencing: From Raw Data to Systems Level Analyses.
    da Silveira WA; Hazard ES; Chung D; Hardiman G
    Methods Mol Biol; 2019; 1908():185-204. PubMed ID: 30649729
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Comparative Analysis of Droplet-Based Ultra-High-Throughput Single-Cell RNA-Seq Systems.
    Zhang X; Li T; Liu F; Chen Y; Yao J; Li Z; Huang Y; Wang J
    Mol Cell; 2019 Jan; 73(1):130-142.e5. PubMed ID: 30472192
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Bioinformatics Analysis of Small RNA Transcriptomes: The Detailed Workflow.
    Ilnytskyy S; Bilichak A
    Methods Mol Biol; 2017; 1456():197-224. PubMed ID: 27770368
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Analysis of ChIP-Seq and RNA-Seq Data with BioWardrobe.
    Vallabh S; Kartashov AV; Barski A
    Methods Mol Biol; 2018; 1783():343-360. PubMed ID: 29767371
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments.
    Lott SC; Wolfien M; Riege K; Bagnacani A; Wolkenhauer O; Hoffmann S; Hess WR
    J Biotechnol; 2017 Nov; 261():85-96. PubMed ID: 28676233
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Plant Transcriptome Analysis with HISAT-StringTie-Ballgown and TopHat-Cufflinks Pipelines.
    Rao X
    Methods Mol Biol; 2024; 2812():203-213. PubMed ID: 39068364
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 21.