189 related articles for article (PubMed ID: 27663496)
1. FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners.
Rodriguez-Lujan I; Hasty J; Huerta R
Bioinformatics; 2017 Jan; 33(2):210-218. PubMed ID: 27663496
[TBL] [Abstract][Full Text] [Related]
2. Evaluation of tools for long read RNA-seq splice-aware alignment.
Križanovic K; Echchiki A; Roux J; Šikic M
Bioinformatics; 2018 Mar; 34(5):748-754. PubMed ID: 29069314
[TBL] [Abstract][Full Text] [Related]
3. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
Wilton R; Li X; Feinberg AP; Szalay AS
Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
[TBL] [Abstract][Full Text] [Related]
4. Vargas: heuristic-free alignment for assessing linear and graph read aligners.
Darby CA; Gaddipati R; Schatz MC; Langmead B
Bioinformatics; 2020 Jun; 36(12):3712-3718. PubMed ID: 32321164
[TBL] [Abstract][Full Text] [Related]
5. RNA-Seq read alignments with PALMapper.
Jean G; Kahles A; Sreedharan VT; De Bona F; Rätsch G
Curr Protoc Bioinformatics; 2010 Dec; Chapter 11():Unit 11.6. PubMed ID: 21154708
[TBL] [Abstract][Full Text] [Related]
6. Comparative analysis of RNA-Seq alignment algorithms and the RNA-Seq unified mapper (RUM).
Grant GR; Farkas MH; Pizarro AD; Lahens NF; Schug J; Brunk BP; Stoeckert CJ; Hogenesch JB; Pierce EA
Bioinformatics; 2011 Sep; 27(18):2518-28. PubMed ID: 21775302
[TBL] [Abstract][Full Text] [Related]
7. RapMap: a rapid, sensitive and accurate tool for mapping RNA-seq reads to transcriptomes.
Srivastava A; Sarkar H; Gupta N; Patro R
Bioinformatics; 2016 Jun; 32(12):i192-i200. PubMed ID: 27307617
[TBL] [Abstract][Full Text] [Related]
8. TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.
Nariai N; Hirose O; Kojima K; Nagasaki M
Bioinformatics; 2013 Sep; 29(18):2292-9. PubMed ID: 23821651
[TBL] [Abstract][Full Text] [Related]
9. Combining probabilistic alignments with read pair information improves accuracy of split-alignments.
Shrestha AMS; Yoshikawa N; Asai K
Bioinformatics; 2018 Nov; 34(21):3631-3637. PubMed ID: 29790902
[TBL] [Abstract][Full Text] [Related]
10. JAGuaR: junction alignments to genome for RNA-seq reads.
Butterfield YS; Kreitzman M; Thiessen N; Corbett RD; Li Y; Pang J; Ma YP; Jones SJ; Birol İ
PLoS One; 2014; 9(7):e102398. PubMed ID: 25062255
[TBL] [Abstract][Full Text] [Related]
11. TotalReCaller: improved accuracy and performance via integrated alignment and base-calling.
Menges F; Narzisi G; Mishra B
Bioinformatics; 2011 Sep; 27(17):2330-7. PubMed ID: 21724593
[TBL] [Abstract][Full Text] [Related]
12. Murlet: a practical multiple alignment tool for structural RNA sequences.
Kiryu H; Tabei Y; Kin T; Asai K
Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961
[TBL] [Abstract][Full Text] [Related]
13. ASElux: an ultra-fast and accurate allelic reads counter.
Miao Z; Alvarez M; Pajukanta P; Ko A
Bioinformatics; 2018 Apr; 34(8):1313-1320. PubMed ID: 29186329
[TBL] [Abstract][Full Text] [Related]
14. BM-map: Bayesian mapping of multireads for next-generation sequencing data.
Ji Y; Xu Y; Zhang Q; Tsui KW; Yuan Y; Norris C; Liang S; Liang H
Biometrics; 2011 Dec; 67(4):1215-24. PubMed ID: 21517792
[TBL] [Abstract][Full Text] [Related]
15. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.
Thankaswamy-Kosalai S; Sen P; Nookaew I
Genomics; 2017 Jul; 109(3-4):186-191. PubMed ID: 28286147
[TBL] [Abstract][Full Text] [Related]
16. Oculus: faster sequence alignment by streaming read compression.
Veeneman BA; Iyer MK; Chinnaiyan AM
BMC Bioinformatics; 2012 Nov; 13():297. PubMed ID: 23148484
[TBL] [Abstract][Full Text] [Related]
17. rHAT: fast alignment of noisy long reads with regional hashing.
Liu B; Guan D; Teng M; Wang Y
Bioinformatics; 2016 Jun; 32(11):1625-31. PubMed ID: 26568628
[TBL] [Abstract][Full Text] [Related]
18. deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns.
Langenberger D; Pundhir S; Ekstrøm CT; Stadler PF; Hoffmann S; Gorodkin J
Bioinformatics; 2012 Jan; 28(1):17-24. PubMed ID: 22053076
[TBL] [Abstract][Full Text] [Related]
19. BatMis: a fast algorithm for k-mismatch mapping.
Tennakoon C; Purbojati RW; Sung WK
Bioinformatics; 2012 Aug; 28(16):2122-8. PubMed ID: 22689389
[TBL] [Abstract][Full Text] [Related]
20. LAMSA: fast split read alignment with long approximate matches.
Liu B; Gao Y; Wang Y
Bioinformatics; 2017 Jan; 33(2):192-201. PubMed ID: 27667793
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]