BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

218 related articles for article (PubMed ID: 27665593)

  • 1. A Method to Predict the Structure and Stability of RNA/RNA Complexes.
    Xu X; Chen SJ
    Methods Mol Biol; 2016; 1490():63-72. PubMed ID: 27665593
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Predicting structure and stability for RNA complexes with intermolecular loop-loop base-pairing.
    Cao S; Xu X; Chen SJ
    RNA; 2014 Jun; 20(6):835-45. PubMed ID: 24751648
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure and stability of RNA/RNA kissing complex: with application to HIV dimerization initiation signal.
    Cao S; Chen SJ
    RNA; 2011 Dec; 17(12):2130-43. PubMed ID: 22028361
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A Method to Predict the 3D Structure of an RNA Scaffold.
    Xu X; Chen SJ
    Methods Mol Biol; 2015; 1316():1-11. PubMed ID: 25967048
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Stabilities of HIV-1 DIS type RNA loop-loop interactions in vitro and in vivo.
    Lorenz C; Piganeau N; Schroeder R
    Nucleic Acids Res; 2006; 34(1):334-42. PubMed ID: 16410613
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Base pairing at the stem-loop junction in the SL1 kissing complex of HIV-1 RNA: a thermodynamic study probed by molecular dynamics simulation.
    Aci S; Ramstein J; Genest D
    J Biomol Struct Dyn; 2004 Jun; 21(6):833-40. PubMed ID: 15107005
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Molecular modeling and dynamics studies of HIV-1 kissing loop structures.
    Pattabiraman N; Martinez HM; Shapiro BA
    J Biomol Struct Dyn; 2002 Dec; 20(3):397-412. PubMed ID: 12437378
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Determination of thermodynamic parameters for HIV DIS type loop-loop kissing complexes.
    Weixlbaumer A; Werner A; Flamm C; Westhof E; Schroeder R
    Nucleic Acids Res; 2004; 32(17):5126-33. PubMed ID: 15459283
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structure and dimerization of HIV-1 kissing loop aptamers.
    Lodmell JS; Ehresmann C; Ehresmann B; Marquet R
    J Mol Biol; 2001 Aug; 311(3):475-90. PubMed ID: 11493002
    [TBL] [Abstract][Full Text] [Related]  

  • 10. On the conformational stability of the smallest RNA kissing complexes maintained through two G·C base pairs.
    Chu W; Weerasekera A; Kim CH
    Biochem Biophys Res Commun; 2017 Jan; 483(1):39-44. PubMed ID: 28063925
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Vfold: a web server for RNA structure and folding thermodynamics prediction.
    Xu X; Zhao P; Chen SJ
    PLoS One; 2014; 9(9):e107504. PubMed ID: 25215508
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Predicting RNA-RNA Interactions Using RNAstructure.
    DiChiacchio L; Mathews DH
    Methods Mol Biol; 2016; 1490():51-62. PubMed ID: 27665592
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Non-canonical interactions in a kissing loop complex: the dimerization initiation site of HIV-1 genomic RNA.
    Paillart JC; Westhof E; Ehresmann C; Ehresmann B; Marquet R
    J Mol Biol; 1997 Jul; 270(1):36-49. PubMed ID: 9231899
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Predicting RNA pseudoknot folding thermodynamics.
    Cao S; Chen SJ
    Nucleic Acids Res; 2006; 34(9):2634-52. PubMed ID: 16709732
    [TBL] [Abstract][Full Text] [Related]  

  • 15. NMR structure of the mature dimer initiation complex of HIV-1 genomic RNA.
    Mujeeb A; Parslow TG; Zarrinpar A; Das C; James TL
    FEBS Lett; 1999 Sep; 458(3):387-92. PubMed ID: 10570946
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Physics-based de novo prediction of RNA 3D structures.
    Cao S; Chen SJ
    J Phys Chem B; 2011 Apr; 115(14):4216-26. PubMed ID: 21413701
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The molecular interactions that stabilize RNA tertiary structure: RNA motifs, patterns, and networks.
    Butcher SE; Pyle AM
    Acc Chem Res; 2011 Dec; 44(12):1302-11. PubMed ID: 21899297
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting loop-helix tertiary structural contacts in RNA pseudoknots.
    Cao S; Giedroc DP; Chen SJ
    RNA; 2010 Mar; 16(3):538-52. PubMed ID: 20100813
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Multiple secondary structure rearrangements during HIV-1 RNA dimerization.
    Huthoff H; Berkhout B
    Biochemistry; 2002 Aug; 41(33):10439-45. PubMed ID: 12173930
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Secondary Structure Prediction of Single Sequences Using RNAstructure.
    Xu ZZ; Mathews DH
    Methods Mol Biol; 2016; 1490():15-34. PubMed ID: 27665590
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.