232 related articles for article (PubMed ID: 27671358)
1. Monte Carlo simulation algorithm for B-DNA.
Howell SC; Qiu X; Curtis JE
J Comput Chem; 2016 Nov; 37(29):2553-63. PubMed ID: 27671358
[TBL] [Abstract][Full Text] [Related]
2. Hybrid Methods for Modeling Protein Structures Using Molecular Dynamics Simulations and Small-Angle X-Ray Scattering Data.
Ekimoto T; Ikeguchi M
Adv Exp Med Biol; 2018; 1105():237-258. PubMed ID: 30617833
[TBL] [Abstract][Full Text] [Related]
3. First example of multi-scale reverse Monte Carlo modeling for small-angle scattering experimental data using reverse mapping from coarse-grained particles to atoms.
Hagita K; McGreevy RL; Arai T; Inui M; Matsuda K; Tamura K
J Phys Condens Matter; 2010 Oct; 22(40):404215. PubMed ID: 21386576
[TBL] [Abstract][Full Text] [Related]
4. Small-angle neutron scattering study of a monoclonal antibody using free-energy constraints.
Clark NJ; Zhang H; Krueger S; Lee HJ; Ketchem RR; Kerwin B; Kanapuram SR; Treuheit MJ; McAuley A; Curtis JE
J Phys Chem B; 2013 Nov; 117(45):14029-38. PubMed ID: 24171386
[TBL] [Abstract][Full Text] [Related]
5. Combined Small-Angle X-ray and Neutron Scattering Restraints in Molecular Dynamics Simulations.
Chen PC; Shevchuk R; Strnad FM; Lorenz C; Karge L; Gilles R; Stadler AM; Hennig J; Hub JS
J Chem Theory Comput; 2019 Aug; 15(8):4687-4698. PubMed ID: 31251056
[TBL] [Abstract][Full Text] [Related]
6. Coarse-grained modeling of the intrinsically disordered protein Histatin 5 in solution: Monte Carlo simulations in combination with SAXS.
Cragnell C; Durand D; Cabane B; Skepö M
Proteins; 2016 Jun; 84(6):777-91. PubMed ID: 26914439
[TBL] [Abstract][Full Text] [Related]
7. Bayesian inference of protein ensembles from SAXS data.
Antonov LD; Olsson S; Boomsma W; Hamelryck T
Phys Chem Chem Phys; 2016 Feb; 18(8):5832-8. PubMed ID: 26548662
[TBL] [Abstract][Full Text] [Related]
8. Determining Atomistic SAXS Models of Tri-Ubiquitin Chains from Bayesian Analysis of Accelerated Molecular Dynamics Simulations.
Bowerman S; Rana ASJB; Rice A; Pham GH; Strieter ER; Wereszczynski J
J Chem Theory Comput; 2017 Jun; 13(6):2418-2429. PubMed ID: 28482663
[TBL] [Abstract][Full Text] [Related]
9. RMCSANS--modelling the inter-particle term of small angle scattering data via the reverse Monte Carlo method.
Gereben O; Pusztai L; McGreevy RL
J Phys Condens Matter; 2010 Oct; 22(40):404216. PubMed ID: 21386577
[TBL] [Abstract][Full Text] [Related]
10. Combined Monte Carlo/torsion-angle molecular dynamics for ensemble modeling of proteins, nucleic acids and carbohydrates.
Zhang W; Howell SC; Wright DW; Heindel A; Qiu X; Chen J; Curtis JE
J Mol Graph Model; 2017 May; 73():179-190. PubMed ID: 28292714
[TBL] [Abstract][Full Text] [Related]
11. Atomic-resolution structural information from scattering experiments on macromolecules in solution.
Köfinger J; Hummer G
Phys Rev E Stat Nonlin Soft Matter Phys; 2013 May; 87(5):052712. PubMed ID: 23767571
[TBL] [Abstract][Full Text] [Related]
12. Characterization of the NISTmAb Reference Material using small-angle scattering and molecular simulation : Part I: Dilute protein solutions.
Castellanos MM; Howell SC; Gallagher DT; Curtis JE
Anal Bioanal Chem; 2018 Mar; 410(8):2141-2159. PubMed ID: 29423600
[TBL] [Abstract][Full Text] [Related]
13. Numerical validation of IFT in the analysis of protein-surfactant complexes with SAXS and SANS.
Franklin JM; Surampudi LN; Ashbaugh HS; Pozzo DC
Langmuir; 2012 Aug; 28(34):12593-600. PubMed ID: 22861495
[TBL] [Abstract][Full Text] [Related]
14. Utilizing Coarse-Grained Modeling and Monte Carlo Simulations to Evaluate the Conformational Ensemble of Intrinsically Disordered Proteins and Regions.
Cragnell C; Rieloff E; Skepö M
J Mol Biol; 2018 Aug; 430(16):2478-2492. PubMed ID: 29573987
[TBL] [Abstract][Full Text] [Related]
15. Efficient chain moves for Monte Carlo simulations of a wormlike DNA model: excluded volume, supercoils, site juxtapositions, knots, and comparisons with random-flight and lattice models.
Liu Z; Chan HS
J Chem Phys; 2008 Apr; 128(14):145104. PubMed ID: 18412482
[TBL] [Abstract][Full Text] [Related]
16. Atomistic Modeling of Scattering Curves for Human IgG1/4 Reveals New Structure-Function Insights.
Wright DW; Elliston ELK; Hui GK; Perkins SJ
Biophys J; 2019 Dec; 117(11):2101-2119. PubMed ID: 31708160
[TBL] [Abstract][Full Text] [Related]
17. Reconstruction of low-resolution molecular structures from simulated atomic force microscopy images.
Dasgupta B; Miyashita O; Tama F
Biochim Biophys Acta Gen Subj; 2020 Feb; 1864(2):129420. PubMed ID: 31472175
[TBL] [Abstract][Full Text] [Related]
18. Coarse-Grained Molecular Modeling of the Solution Structure Ensemble of Dengue Virus Nonstructural Protein 5 with Small-Angle X-ray Scattering Intensity.
Zhu G; Saw WG; Nalaparaju A; Grüber G; Lu L
J Phys Chem B; 2017 Mar; 121(10):2252-2264. PubMed ID: 28224788
[TBL] [Abstract][Full Text] [Related]
19. Ambiguity assessment of small-angle scattering curves from monodisperse systems.
Petoukhov MV; Svergun DI
Acta Crystallogr D Biol Crystallogr; 2015 May; 71(Pt 5):1051-8. PubMed ID: 25945570
[TBL] [Abstract][Full Text] [Related]
20. Combining molecular dynamics simulations with small-angle X-ray and neutron scattering data to study multi-domain proteins in solution.
Larsen AH; Wang Y; Bottaro S; Grudinin S; Arleth L; Lindorff-Larsen K
PLoS Comput Biol; 2020 Apr; 16(4):e1007870. PubMed ID: 32339173
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
