310 related articles for article (PubMed ID: 27693290)
21. Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data.
Beerenwinkel N; Günthard HF; Roth V; Metzner KJ
Front Microbiol; 2012; 3():329. PubMed ID: 22973268
[TBL] [Abstract][Full Text] [Related]
22. Computational framework for next-generation sequencing of heterogeneous viral populations using combinatorial pooling.
Skums P; Artyomenko A; Glebova O; Ramachandran S; Mandoiu I; Campo DS; Dimitrova Z; Zelikovsky A; Khudyakov Y
Bioinformatics; 2015 Mar; 31(5):682-90. PubMed ID: 25359889
[TBL] [Abstract][Full Text] [Related]
23. Full-length haplotype reconstruction to infer the structure of heterogeneous virus populations.
Giallonardo FD; Töpfer A; Rey M; Prabhakaran S; Duport Y; Leemann C; Schmutz S; Campbell NK; Joos B; Lecca MR; Patrignani A; Däumer M; Beisel C; Rusert P; Trkola A; Günthard HF; Roth V; Beerenwinkel N; Metzner KJ
Nucleic Acids Res; 2014 Aug; 42(14):e115. PubMed ID: 24972832
[TBL] [Abstract][Full Text] [Related]
24. Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing.
Van den Hoecke S; Verhelst J; Vuylsteke M; Saelens X
BMC Genomics; 2015 Feb; 16(1):79. PubMed ID: 25758772
[TBL] [Abstract][Full Text] [Related]
25. Reconstructing viral haplotypes using long reads.
Cai D; Sun Y
Bioinformatics; 2022 Apr; 38(8):2127-2134. PubMed ID: 35157018
[TBL] [Abstract][Full Text] [Related]
26. Mutant-bin: unsupervised haplotype estimation of viral population diversity without reference genome.
Prabhakara S; Malhotra R; Acharya R; Poss M
J Comput Biol; 2013 Jun; 20(6):453-63. PubMed ID: 23718149
[TBL] [Abstract][Full Text] [Related]
27. Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies.
Lu IN; Muller CP; He FQ
Virus Res; 2020 Jul; 283():197963. PubMed ID: 32278821
[TBL] [Abstract][Full Text] [Related]
28. Next generation sequencing technologies: tool to study avian virus diversity.
Kapgate SS; Barbuddhe SB; Kumanan K
Acta Virol; 2015 Mar; 59(1):3-13. PubMed ID: 25790045
[TBL] [Abstract][Full Text] [Related]
29. Estimating Fitness of Viral Quasispecies from Next-Generation Sequencing Data.
Seifert D; Beerenwinkel N
Curr Top Microbiol Immunol; 2016; 392():181-200. PubMed ID: 26318139
[TBL] [Abstract][Full Text] [Related]
30. A new approach to determining whole viral genomic sequences including termini using a single deep sequencing run.
Alfson KJ; Beadles MW; Griffiths A
J Virol Methods; 2014 Nov; 208():1-5. PubMed ID: 25075935
[TBL] [Abstract][Full Text] [Related]
31. Combinatorial analysis and algorithms for quasispecies reconstruction using next-generation sequencing.
Prosperi MC; Prosperi L; Bruselles A; Abbate I; Rozera G; Vincenti D; Solmone MC; Capobianchi MR; Ulivi G
BMC Bioinformatics; 2011 Jan; 12():5. PubMed ID: 21208435
[TBL] [Abstract][Full Text] [Related]
32. Software Dedicated to Virus Sequence Analysis "Bioinformatics Goes Viral".
Hölzer M; Marz M
Adv Virus Res; 2017; 99():233-257. PubMed ID: 29029728
[TBL] [Abstract][Full Text] [Related]
33. Deep sequencing of virus-derived small interfering RNAs and RNA from viral particles shows highly similar mutational landscapes of a plant virus population.
Kutnjak D; Rupar M; Gutierrez-Aguirre I; Curk T; Kreuze JF; Ravnikar M
J Virol; 2015 May; 89(9):4760-9. PubMed ID: 25673712
[TBL] [Abstract][Full Text] [Related]
34. Targeted virus detection in next-generation sequencing data using an automated e-probe based approach.
Visser M; Burger JT; Maree HJ
Virology; 2016 Aug; 495():122-8. PubMed ID: 27209446
[TBL] [Abstract][Full Text] [Related]
35. QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.
Prosperi MC; Salemi M
Bioinformatics; 2012 Jan; 28(1):132-3. PubMed ID: 22088846
[TBL] [Abstract][Full Text] [Related]
36. The pepper virome: natural co-infection of diverse viruses and their quasispecies.
Jo Y; Choi H; Kim SM; Kim SL; Lee BC; Cho WK
BMC Genomics; 2017 Jun; 18(1):453. PubMed ID: 28595635
[TBL] [Abstract][Full Text] [Related]
37. Separation and assembly of deep sequencing data into discrete sub-population genomes.
Karagiannis K; Simonyan V; Chumakov K; Mazumder R
Nucleic Acids Res; 2017 Nov; 45(19):10989-11003. PubMed ID: 28977510
[TBL] [Abstract][Full Text] [Related]
38. Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection.
Dialdestoro K; Sibbesen JA; Maretty L; Raghwani J; Gall A; Kellam P; Pybus OG; Hein J; Jenkins PA
Genetics; 2016 Apr; 202(4):1449-72. PubMed ID: 26857628
[TBL] [Abstract][Full Text] [Related]
39. Haplotype inference from short sequence reads using a population genealogical history model.
Zhang J; Wu Y
Pac Symp Biocomput; 2011; ():288-99. PubMed ID: 21121056
[TBL] [Abstract][Full Text] [Related]
40. From deep sequencing to viral tagging: recent advances in viral metagenomics.
Willner D; Hugenholtz P
Bioessays; 2013 May; 35(5):436-42. PubMed ID: 23450659
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]