BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

210 related articles for article (PubMed ID: 2769750)

  • 1. Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme.
    Brooks CL; Karplus M
    J Mol Biol; 1989 Jul; 208(1):159-81. PubMed ID: 2769750
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A molecular dynamics analysis of protein structural elements.
    Post CB; Dobson CM; Karplus M
    Proteins; 1989; 5(4):337-54. PubMed ID: 2798410
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular anatomy of preferential interaction coefficients by elucidating protein solvation in mixed solvents: methodology and application for lysozyme in aqueous glycerol.
    Vagenende V; Yap MG; Trout BL
    J Phys Chem B; 2009 Aug; 113(34):11743-53. PubMed ID: 19653677
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hydration structure of human lysozyme investigated by molecular dynamics simulation and cryogenic X-ray crystal structure analyses: on the correlation between crystal water sites, solvent density, and solvent dipole.
    Higo J; Nakasako M
    J Comput Chem; 2002 Nov; 23(14):1323-36. PubMed ID: 12214315
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural and thermodynamic analysis of the binding of solvent at internal sites in T4 lysozyme.
    Xu J; Baase WA; Quillin ML; Baldwin EP; Matthews BW
    Protein Sci; 2001 May; 10(5):1067-78. PubMed ID: 11316887
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Polar solvation dynamics of lysozyme from molecular dynamics studies.
    Sinha SK; Bandyopadhyay S
    J Chem Phys; 2012 May; 136(18):185102. PubMed ID: 22583311
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution.
    Im W; Roux B
    J Mol Biol; 2002 Jun; 319(5):1177-97. PubMed ID: 12079356
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A comparison of structural and dynamic properties of different simulation methods applied to SH3.
    van Aalten DM; Amadei A; Bywater R; Findlay JB; Berendsen HJ; Sander C; Stouten PF
    Biophys J; 1996 Feb; 70(2):684-92. PubMed ID: 8789085
    [TBL] [Abstract][Full Text] [Related]  

  • 9. How do trehalose, maltose, and sucrose influence some structural and dynamical properties of lysozyme? Insight from molecular dynamics simulations.
    Lerbret A; Bordat P; Affouard F; Hédoux A; Guinet Y; Descamps M
    J Phys Chem B; 2007 Aug; 111(31):9410-20. PubMed ID: 17629322
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Microcalorimetric study of thermal unfolding of lysozyme in water/glycerol mixtures: an analysis by solvent exchange model.
    Spinozzi F; Ortore MG; Sinibaldi R; Mariani P; Esposito A; Cinelli S; Onori G
    J Chem Phys; 2008 Jul; 129(3):035101. PubMed ID: 18647045
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Acceptable protein and solvent behavior in primary hydration shell simulations of hen lysozyme.
    Hamaneh MB; Buck M
    Biophys J; 2007 Apr; 92(7):L49-51. PubMed ID: 17259273
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics simulations of ribonuclease T1: analysis of the effect of solvent on the structure, fluctuations, and active site of the free enzyme.
    MacKerell AD; Nilsson L; Rigler R; Saenger W
    Biochemistry; 1988 Jun; 27(12):4547-56. PubMed ID: 3139027
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Quantitative characterization of local protein solvation to predict solvent effects on protein structure.
    Vagenende V; Trout BL
    Biophys J; 2012 Sep; 103(6):1354-62. PubMed ID: 22995508
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Molecular dynamics simulations of an enzyme surrounded by vacuum, water, or a hydrophobic solvent.
    Norin M; Haeffner F; Hult K; Edholm O
    Biophys J; 1994 Aug; 67(2):548-59. PubMed ID: 7948673
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulation or structure refinement of proteins: are solvent molecules required? A case study using hen lysozyme.
    Pechlaner M; van Gunsteren WF; Hansen N; Smith LJ
    Eur Biophys J; 2022 Apr; 51(3):265-282. PubMed ID: 35303138
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Carbohydrate-binding proteins: Dissecting ligand structures through solvent environment occupancy.
    Gauto DF; Di Lella S; Guardia CM; Estrin DA; Martí MA
    J Phys Chem B; 2009 Jun; 113(25):8717-24. PubMed ID: 19485380
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Protein dynamics in solution and in a crystalline environment: a molecular dynamics study.
    van Gunsteren WF; Karplus M
    Biochemistry; 1982 May; 21(10):2259-74. PubMed ID: 6178423
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Lid opening and conformational stability of T1 Lipase is mediated by increasing chain length polar solvents.
    Maiangwa J; Mohamad Ali MS; Salleh AB; Rahman RNZRA; Normi YM; Mohd Shariff F; Leow TC
    PeerJ; 2017; 5():e3341. PubMed ID: 28533982
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Solvent effects in the slow dynamics of proteins.
    Hinsen K; Kneller GR
    Proteins; 2008 Mar; 70(4):1235-42. PubMed ID: 17853448
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Alanine scanning mutagenesis of the alpha-helix 115-123 of phage T4 lysozyme: effects on structure, stability and the binding of solvent.
    Blaber M; Baase WA; Gassner N; Matthews BW
    J Mol Biol; 1995 Feb; 246(2):317-30. PubMed ID: 7869383
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.