BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

422 related articles for article (PubMed ID: 27701764)

  • 1. Modeling and minimizing CAPRI round 30 symmetrical protein complexes from CASP-11 structural models.
    El Houasli M; Maigret B; Devignes MD; Ghoorah AW; Grudinin S; Ritchie DW
    Proteins; 2017 Mar; 85(3):463-469. PubMed ID: 27701764
    [TBL] [Abstract][Full Text] [Related]  

  • 2. pyDock scoring for the new modeling challenges in docking: Protein-peptide, homo-multimers, and domain-domain interactions.
    Pallara C; Jiménez-García B; Romero M; Moal IH; Fernández-Recio J
    Proteins; 2017 Mar; 85(3):487-496. PubMed ID: 27701776
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Addressing recent docking challenges: A hybrid strategy to integrate template-based and free protein-protein docking.
    Yan Y; Wen Z; Wang X; Huang SY
    Proteins; 2017 Mar; 85(3):497-512. PubMed ID: 28026062
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Sense and simplicity in HADDOCK scoring: Lessons from CASP-CAPRI round 1.
    Vangone A; Rodrigues JP; Xue LC; van Zundert GC; Geng C; Kurkcuoglu Z; Nellen M; Narasimhan S; Karaca E; van Dijk M; Melquiond AS; Visscher KM; Trellet M; Kastritis PL; Bonvin AM
    Proteins; 2017 Mar; 85(3):417-423. PubMed ID: 27802573
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Prediction of homoprotein and heteroprotein complexes by protein docking and template-based modeling: A CASP-CAPRI experiment.
    Lensink MF; Velankar S; Kryshtafovych A; Huang SY; Schneidman-Duhovny D; Sali A; Segura J; Fernandez-Fuentes N; Viswanath S; Elber R; Grudinin S; Popov P; Neveu E; Lee H; Baek M; Park S; Heo L; Rie Lee G; Seok C; Qin S; Zhou HX; Ritchie DW; Maigret B; Devignes MD; Ghoorah A; Torchala M; Chaleil RA; Bates PA; Ben-Zeev E; Eisenstein M; Negi SS; Weng Z; Vreven T; Pierce BG; Borrman TM; Yu J; Ochsenbein F; Guerois R; Vangone A; Rodrigues JP; van Zundert G; Nellen M; Xue L; Karaca E; Melquiond AS; Visscher K; Kastritis PL; Bonvin AM; Xu X; Qiu L; Yan C; Li J; Ma Z; Cheng J; Zou X; Shen Y; Peterson LX; Kim HR; Roy A; Han X; Esquivel-Rodriguez J; Kihara D; Yu X; Bruce NJ; Fuller JC; Wade RC; Anishchenko I; Kundrotas PJ; Vakser IA; Imai K; Yamada K; Oda T; Nakamura T; Tomii K; Pallara C; Romero-Durana M; Jiménez-García B; Moal IH; Férnandez-Recio J; Joung JY; Kim JY; Joo K; Lee J; Kozakov D; Vajda S; Mottarella S; Hall DR; Beglov D; Mamonov A; Xia B; Bohnuud T; Del Carpio CA; Ichiishi E; Marze N; Kuroda D; Roy Burman SS; Gray JJ; Chermak E; Cavallo L; Oliva R; Tovchigrechko A; Wodak SJ
    Proteins; 2016 Sep; 84 Suppl 1(Suppl Suppl 1):323-48. PubMed ID: 27122118
    [TBL] [Abstract][Full Text] [Related]  

  • 6. New additions to the ClusPro server motivated by CAPRI.
    Vajda S; Yueh C; Beglov D; Bohnuud T; Mottarella SE; Xia B; Hall DR; Kozakov D
    Proteins; 2017 Mar; 85(3):435-444. PubMed ID: 27936493
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Performance of MDockPP in CAPRI rounds 28-29 and 31-35 including the prediction of water-mediated interactions.
    Xu X; Qiu L; Yan C; Ma Z; Grinter SZ; Zou X
    Proteins; 2017 Mar; 85(3):424-434. PubMed ID: 27802576
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FlexPepDock lessons from CAPRI peptide-protein rounds and suggested new criteria for assessment of model quality and utility.
    Marcu O; Dodson EJ; Alam N; Sperber M; Kozakov D; Lensink MF; Schueler-Furman O
    Proteins; 2017 Mar; 85(3):445-462. PubMed ID: 28002624
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Template-based modeling and ab initio refinement of protein oligomer structures using GALAXY in CAPRI round 30.
    Lee H; Baek M; Lee GR; Park S; Seok C
    Proteins; 2017 Mar; 85(3):399-407. PubMed ID: 27770545
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI.
    Schindler CE; Chauvot de Beauchêne I; de Vries SJ; Zacharias M
    Proteins; 2017 Mar; 85(3):391-398. PubMed ID: 27785830
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Human and server docking prediction for CAPRI round 30-35 using LZerD with combined scoring functions.
    Peterson LX; Kim H; Esquivel-Rodriguez J; Roy A; Han X; Shin WH; Zhang J; Terashi G; Lee M; Kihara D
    Proteins; 2017 Mar; 85(3):513-527. PubMed ID: 27654025
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Performance of ZDOCK and IRAD in CAPRI rounds 28-34.
    Vreven T; Pierce BG; Borrman TM; Weng Z
    Proteins; 2017 Mar; 85(3):408-416. PubMed ID: 27718275
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Template-based modeling and ab-initio docking using CoDock in CAPRI.
    Kong R; Liu RR; Xu XM; Zhang DW; Xu XS; Shi H; Chang S
    Proteins; 2020 Aug; 88(8):1100-1109. PubMed ID: 32181952
    [TBL] [Abstract][Full Text] [Related]  

  • 14. The challenge of modeling protein assemblies: the CASP12-CAPRI experiment.
    Lensink MF; Velankar S; Baek M; Heo L; Seok C; Wodak SJ
    Proteins; 2018 Mar; 86 Suppl 1():257-273. PubMed ID: 29127686
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition.
    Lensink MF; Velankar S; Wodak SJ
    Proteins; 2017 Mar; 85(3):359-377. PubMed ID: 27865038
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modeling oblong proteins and water-mediated interfaces with RosettaDock in CAPRI rounds 28-35.
    Marze NA; Jeliazkov JR; Roy Burman SS; Boyken SE; DiMaio F; Gray JJ
    Proteins; 2017 Mar; 85(3):479-486. PubMed ID: 27667482
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modeling complexes of modeled proteins.
    Anishchenko I; Kundrotas PJ; Vakser IA
    Proteins; 2017 Mar; 85(3):470-478. PubMed ID: 27701777
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Predicting protein conformational changes for unbound and homology docking: learning from intrinsic and induced flexibility.
    Chen H; Sun Y; Shen Y
    Proteins; 2017 Mar; 85(3):544-556. PubMed ID: 27862345
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Challenges and opportunities of automated protein-protein docking: HDOCK server vs human predictions in CAPRI Rounds 38-46.
    Yan Y; He J; Feng Y; Lin P; Tao H; Huang SY
    Proteins; 2020 Aug; 88(8):1055-1069. PubMed ID: 31994779
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment.
    Lensink MF; Brysbaert G; Nadzirin N; Velankar S; Chaleil RAG; Gerguri T; Bates PA; Laine E; Carbone A; Grudinin S; Kong R; Liu RR; Xu XM; Shi H; Chang S; Eisenstein M; Karczynska A; Czaplewski C; Lubecka E; Lipska A; Krupa P; Mozolewska M; Golon Ł; Samsonov S; Liwo A; Crivelli S; Pagès G; Karasikov M; Kadukova M; Yan Y; Huang SY; Rosell M; Rodríguez-Lumbreras LA; Romero-Durana M; Díaz-Bueno L; Fernandez-Recio J; Christoffer C; Terashi G; Shin WH; Aderinwale T; Maddhuri Venkata Subraman SR; Kihara D; Kozakov D; Vajda S; Porter K; Padhorny D; Desta I; Beglov D; Ignatov M; Kotelnikov S; Moal IH; Ritchie DW; Chauvot de Beauchêne I; Maigret B; Devignes MD; Ruiz Echartea ME; Barradas-Bautista D; Cao Z; Cavallo L; Oliva R; Cao Y; Shen Y; Baek M; Park T; Woo H; Seok C; Braitbard M; Bitton L; Scheidman-Duhovny D; Dapkūnas J; Olechnovič K; Venclovas Č; Kundrotas PJ; Belkin S; Chakravarty D; Badal VD; Vakser IA; Vreven T; Vangaveti S; Borrman T; Weng Z; Guest JD; Gowthaman R; Pierce BG; Xu X; Duan R; Qiu L; Hou J; Ryan Merideth B; Ma Z; Cheng J; Zou X; Koukos PI; Roel-Touris J; Ambrosetti F; Geng C; Schaarschmidt J; Trellet ME; Melquiond ASJ; Xue L; Jiménez-García B; van Noort CW; Honorato RV; Bonvin AMJJ; Wodak SJ
    Proteins; 2019 Dec; 87(12):1200-1221. PubMed ID: 31612567
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 22.