These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
4. A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Schwessinger B; Sperschneider J; Cuddy WS; Garnica DP; Miller ME; Taylor JM; Dodds PN; Figueroa M; Park RF; Rathjen JP mBio; 2018 Feb; 9(1):. PubMed ID: 29463659 [TBL] [Abstract][Full Text] [Related]
5. Assembly of complete diploid-phased chromosomes from draft genome sequences. Minio A; Cochetel N; Vondras AM; Massonnet M; Cantu D G3 (Bethesda); 2022 Jul; 12(8):. PubMed ID: 35686922 [TBL] [Abstract][Full Text] [Related]
6. A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome. Padgitt-Cobb LK; Kingan SB; Wells J; Elser J; Kronmiller B; Moore D; Concepcion G; Peluso P; Rank D; Jaiswal P; Henning J; Hendrix DA Plant Genome; 2021 Mar; 14(1):e20072. PubMed ID: 33605092 [TBL] [Abstract][Full Text] [Related]
7. A graph-based approach to diploid genome assembly. Garg S; Rautiainen M; Novak AM; Garrison E; Durbin R; Marschall T Bioinformatics; 2018 Jul; 34(13):i105-i114. PubMed ID: 29949989 [TBL] [Abstract][Full Text] [Related]
8. HaploMerger2: rebuilding both haploid sub-assemblies from high-heterozygosity diploid genome assembly. Huang S; Kang M; Xu A Bioinformatics; 2017 Aug; 33(16):2577-2579. PubMed ID: 28407147 [TBL] [Abstract][Full Text] [Related]
9. VolcanoSV enables accurate and robust structural variant calling in diploid genomes from single-molecule long read sequencing. Luo C; Liu YH; Zhou XM Nat Commun; 2024 Aug; 15(1):6956. PubMed ID: 39138168 [TBL] [Abstract][Full Text] [Related]
10. Fully Phased Sequence of a Diploid Human Genome Determined Soifer L; Fong NL; Yi N; Ireland AT; Lam I; Sooknah M; Paw JS; Peluso P; Concepcion GT; Rank D; Hastie AR; Jojic V; Ruby JG; Botstein D; Roy MA G3 (Bethesda); 2020 Sep; 10(9):2911-2925. PubMed ID: 32631951 [TBL] [Abstract][Full Text] [Related]
15. Gamete Binning to Achieve Haplotype-Resolved Genome Assembly. Sun H; Campoy JA; Schneeberger K Methods Mol Biol; 2023; 2590():201-218. PubMed ID: 36335501 [TBL] [Abstract][Full Text] [Related]
16. Single-pollen-cell sequencing for gamete-based phased diploid genome assembly in plants. Shi D; Wu J; Tang H; Yin H; Wang H; Wang R; Wang R; Qian M; Wu J; Qi K; Xie Z; Wang Z; Zhao X; Zhang S Genome Res; 2019 Nov; 29(11):1889-1899. PubMed ID: 31649061 [TBL] [Abstract][Full Text] [Related]
17. Semi-automated assembly of high-quality diploid human reference genomes. Jarvis ED; Formenti G; Rhie A; Guarracino A; Yang C; Wood J; Tracey A; Thibaud-Nissen F; Vollger MR; Porubsky D; Cheng H; Asri M; Logsdon GA; Carnevali P; Chaisson MJP; Chin CS; Cody S; Collins J; Ebert P; Escalona M; Fedrigo O; Fulton RS; Fulton LL; Garg S; Gerton JL; Ghurye J; Granat A; Green RE; Harvey W; Hasenfeld P; Hastie A; Haukness M; Jaeger EB; Jain M; Kirsche M; Kolmogorov M; Korbel JO; Koren S; Korlach J; Lee J; Li D; Lindsay T; Lucas J; Luo F; Marschall T; Mitchell MW; McDaniel J; Nie F; Olsen HE; Olson ND; Pesout T; Potapova T; Puiu D; Regier A; Ruan J; Salzberg SL; Sanders AD; Schatz MC; Schmitt A; Schneider VA; Selvaraj S; Shafin K; Shumate A; Stitziel NO; Stober C; Torrance J; Wagner J; Wang J; Wenger A; Xiao C; Zimin AV; Zhang G; Wang T; Li H; Garrison E; Haussler D; Hall I; Zook JM; Eichler EE; Phillippy AM; Paten B; Howe K; Miga KH; Nature; 2022 Nov; 611(7936):519-531. PubMed ID: 36261518 [TBL] [Abstract][Full Text] [Related]
18. De novo diploid genome assembly using long noisy reads. Nie F; Ni P; Huang N; Zhang J; Wang Z; Xiao C; Luo F; Wang J Nat Commun; 2024 Apr; 15(1):2964. PubMed ID: 38580638 [TBL] [Abstract][Full Text] [Related]
19. phasebook: haplotype-aware de novo assembly of diploid genomes from long reads. Luo X; Kang X; Schönhuth A Genome Biol; 2021 Oct; 22(1):299. PubMed ID: 34706745 [TBL] [Abstract][Full Text] [Related]
20. Assembly and diploid architecture of an individual human genome via single-molecule technologies. Pendleton M; Sebra R; Pang AW; Ummat A; Franzen O; Rausch T; Stütz AM; Stedman W; Anantharaman T; Hastie A; Dai H; Fritz MH; Cao H; Cohain A; Deikus G; Durrett RE; Blanchard SC; Altman R; Chin CS; Guo Y; Paxinos EE; Korbel JO; Darnell RB; McCombie WR; Kwok PY; Mason CE; Schadt EE; Bashir A Nat Methods; 2015 Aug; 12(8):780-6. PubMed ID: 26121404 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]