These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

129 related articles for article (PubMed ID: 27771482)

  • 21. Predicting Protein Dimer Structures Using MELD × MD.
    Brini E; Kozakov D; Dill KA
    J Chem Theory Comput; 2019 May; 15(5):3381-3389. PubMed ID: 30908034
    [TBL] [Abstract][Full Text] [Related]  

  • 22. ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT.
    Porter KA; Xia B; Beglov D; Bohnuud T; Alam N; Schueler-Furman O; Kozakov D
    Bioinformatics; 2017 Oct; 33(20):3299-3301. PubMed ID: 28430871
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Protein-Protein and Protein-Peptide Docking with ClusPro Server.
    Alekseenko A; Ignatov M; Jones G; Sabitova M; Kozakov D
    Methods Mol Biol; 2020; 2165():157-174. PubMed ID: 32621224
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Predicting oligomeric assemblies: N-mers a primer.
    Comeau SR; Camacho CJ
    J Struct Biol; 2005 Jun; 150(3):233-44. PubMed ID: 15890272
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Combining statistical potentials with dynamics-based entropies improves selection from protein decoys and docking poses.
    Zimmermann MT; Leelananda SP; Kloczkowski A; Jernigan RL
    J Phys Chem B; 2012 Jun; 116(23):6725-31. PubMed ID: 22490366
    [TBL] [Abstract][Full Text] [Related]  

  • 26. iATTRACT: simultaneous global and local interface optimization for protein-protein docking refinement.
    Schindler CE; de Vries SJ; Zacharias M
    Proteins; 2015 Feb; 83(2):248-58. PubMed ID: 25402278
    [TBL] [Abstract][Full Text] [Related]  

  • 27. CyClus: a fast, comprehensive cylindrical interface approximation clustering/reranking method for rigid-body protein-protein docking decoys.
    Omori S; Kitao A
    Proteins; 2013 Jun; 81(6):1005-16. PubMed ID: 23344972
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A holistic approach to protein docking.
    Qin S; Zhou HX
    Proteins; 2007 Dec; 69(4):743-9. PubMed ID: 17803232
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Distinguishing crystallographic from biological interfaces in protein complexes: role of intermolecular contacts and energetics for classification.
    Elez K; Bonvin AMJJ; Vangone A
    BMC Bioinformatics; 2018 Nov; 19(Suppl 15):438. PubMed ID: 30497368
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap.
    Jones G; Jindal A; Ghani U; Kotelnikov S; Egbert M; Hashemi N; Vajda S; Padhorny D; Kozakov D
    Acta Crystallogr D Struct Biol; 2022 Jun; 78(Pt 6):690-697. PubMed ID: 35647916
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Implicit flexibility in protein docking: cross-docking and local refinement.
    Król M; Chaleil RA; Tournier AL; Bates PA
    Proteins; 2007 Dec; 69(4):750-7. PubMed ID: 17671977
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Protein-protein docking with backbone flexibility.
    Wang C; Bradley P; Baker D
    J Mol Biol; 2007 Oct; 373(2):503-19. PubMed ID: 17825317
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Defining the limits of homology modeling in information-driven protein docking.
    Rodrigues JP; Melquiond AS; Karaca E; Trellet M; van Dijk M; van Zundert GC; Schmitz C; de Vries SJ; Bordogna A; Bonati L; Kastritis PL; Bonvin AM
    Proteins; 2013 Dec; 81(12):2119-28. PubMed ID: 23913867
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Prediction and scoring of docking poses with pyDock.
    Grosdidier S; Pons C; Solernou A; Fernández-Recio J
    Proteins; 2007 Dec; 69(4):852-8. PubMed ID: 17876821
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Ranking Docked Models of Protein-Protein Complexes Using Predicted Partner-Specific Protein-Protein Interfaces: A Preliminary Study.
    Xue LC; Jordan RA; El-Manzalawy Y; Dobbs D; Honavar V
    ACM BCB; 2011 Aug; 2011():441-445. PubMed ID: 25905110
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Protein-ligand docking against non-native protein conformers.
    Verdonk ML; Mortenson PN; Hall RJ; Hartshorn MJ; Murray CW
    J Chem Inf Model; 2008 Nov; 48(11):2214-25. PubMed ID: 18954138
    [TBL] [Abstract][Full Text] [Related]  

  • 38. A physical reference state unifies the structure-derived potential of mean force for protein folding and binding.
    Liu S; Zhang C; Zhou H; Zhou Y
    Proteins; 2004 Jul; 56(1):93-101. PubMed ID: 15162489
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Rigid-Docking Approaches to Explore Protein-Protein Interaction Space.
    Matsuzaki Y; Uchikoga N; Ohue M; Akiyama Y
    Adv Biochem Eng Biotechnol; 2017; 160():33-55. PubMed ID: 27830312
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Open interface and large quaternary structure movements in 3D domain swapped proteins: insights from molecular dynamics simulations of the C-terminal swapped dimer of ribonuclease A.
    Merlino A; Ceruso MA; Vitagliano L; Mazzarella L
    Biophys J; 2005 Mar; 88(3):2003-12. PubMed ID: 15596505
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 7.