226 related articles for article (PubMed ID: 27789415)
1. Identifying impact of software dependencies on replicability of biomedical workflows.
Miksa T; Rauber A; Mina E
J Biomed Inform; 2016 Dec; 64():232-254. PubMed ID: 27789415
[TBL] [Abstract][Full Text] [Related]
2. Support for Taverna workflows in the VPH-Share cloud platform.
Kasztelnik M; Coto E; Bubak M; Malawski M; Nowakowski P; Arenas J; Saglimbeni A; Testi D; Frangi AF
Comput Methods Programs Biomed; 2017 Jul; 146():37-46. PubMed ID: 28688488
[TBL] [Abstract][Full Text] [Related]
3. Tavaxy: integrating Taverna and Galaxy workflows with cloud computing support.
Abouelhoda M; Issa SA; Ghanem M
BMC Bioinformatics; 2012 May; 13():77. PubMed ID: 22559942
[TBL] [Abstract][Full Text] [Related]
4. Biowep: a workflow enactment portal for bioinformatics applications.
Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
[TBL] [Abstract][Full Text] [Related]
5. Semantic workflows for benchmark challenges: Enhancing comparability, reusability and reproducibility.
Srivastava A; Adusumilli R; Boyce H; Garijo D; Ratnakar V; Mayani R; Yu T; Machiraju R; Gil Y; Mallick P
Pac Symp Biocomput; 2019; 24():208-219. PubMed ID: 30864323
[TBL] [Abstract][Full Text] [Related]
6. Simplifying the development of portable, scalable, and reproducible workflows.
Piccolo SR; Ence ZE; Anderson EC; Chang JT; Bild AH
Elife; 2021 Oct; 10():. PubMed ID: 34643507
[TBL] [Abstract][Full Text] [Related]
7. From the desktop to the grid: scalable bioinformatics via workflow conversion.
de la Garza L; Veit J; Szolek A; Röttig M; Aiche S; Gesing S; Reinert K; Kohlbacher O
BMC Bioinformatics; 2016 Mar; 17():127. PubMed ID: 26968893
[TBL] [Abstract][Full Text] [Related]
8. qPortal: A platform for data-driven biomedical research.
Mohr C; Friedrich A; Wojnar D; Kenar E; Polatkan AC; Codrea MC; Czemmel S; Kohlbacher O; Nahnsen S
PLoS One; 2018; 13(1):e0191603. PubMed ID: 29352322
[TBL] [Abstract][Full Text] [Related]
9. Client Applications and Server-Side Docker for Management of RNASeq and/or VariantSeq Workflows and Pipelines of the GPRO Suite.
Hafez AI; Soriano B; Elsayed AA; Futami R; Ceprian R; Ramos-Ruiz R; Martinez G; Roig FJ; Torres-Font MA; Naya-Catala F; Calduch-Giner JA; Trilla-Fuertes L; Gamez-Pozo A; Arnau V; Sempere-Luna JM; Perez-Sanchez J; Gabaldon T; Llorens C
Genes (Basel); 2023 Jan; 14(2):. PubMed ID: 36833195
[TBL] [Abstract][Full Text] [Related]
10. Assessing the impact of introductory programming workshops on the computational reproducibility of biomedical workflows.
Deardorff A
PLoS One; 2020; 15(7):e0230697. PubMed ID: 32639955
[TBL] [Abstract][Full Text] [Related]
11. Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv.
Khan FZ; Soiland-Reyes S; Sinnott RO; Lonie A; Goble C; Crusoe MR
Gigascience; 2019 Nov; 8(11):. PubMed ID: 31675414
[TBL] [Abstract][Full Text] [Related]
12. The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud.
Wolstencroft K; Haines R; Fellows D; Williams A; Withers D; Owen S; Soiland-Reyes S; Dunlop I; Nenadic A; Fisher P; Bhagat J; Belhajjame K; Bacall F; Hardisty A; Nieva de la Hidalga A; Balcazar Vargas MP; Sufi S; Goble C
Nucleic Acids Res; 2013 Jul; 41(Web Server issue):W557-61. PubMed ID: 23640334
[TBL] [Abstract][Full Text] [Related]
13. Classification of bioinformatics workflows using weighted versions of partitioning and hierarchical clustering algorithms.
Lord E; Diallo AB; Makarenkov V
BMC Bioinformatics; 2015 Mar; 16():68. PubMed ID: 25887434
[TBL] [Abstract][Full Text] [Related]
14. Building Containerized Workflows Using the BioDepot-Workflow-Builder.
Hung LH; Hu J; Meiss T; Ingersoll A; Lloyd W; Kristiyanto D; Xiong Y; Sobie E; Yeung KY
Cell Syst; 2019 Nov; 9(5):508-514.e3. PubMed ID: 31521606
[TBL] [Abstract][Full Text] [Related]
15. Provenance in bioinformatics workflows.
de Paula R; Holanda M; Gomes LS; Lifschitz S; Walter ME
BMC Bioinformatics; 2013; 14 Suppl 11(Suppl 11):S6. PubMed ID: 24564294
[TBL] [Abstract][Full Text] [Related]
16. ImmunoNodes - graphical development of complex immunoinformatics workflows.
Schubert B; de la Garza L; Mohr C; Walzer M; Kohlbacher O
BMC Bioinformatics; 2017 May; 18(1):242. PubMed ID: 28482806
[TBL] [Abstract][Full Text] [Related]
17. CalcTav--integration of a spreadsheet and Taverna workbench.
Sroka J; Krupa Ł; Kierzek AM; Tyszkiewicz J
Bioinformatics; 2011 Sep; 27(18):2618-9. PubMed ID: 21775305
[TBL] [Abstract][Full Text] [Related]
18. Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.
Almugbel R; Hung LH; Hu J; Almutairy A; Ortogero N; Tamta Y; Yeung KY
J Am Med Inform Assoc; 2018 Jan; 25(1):4-12. PubMed ID: 29092073
[TBL] [Abstract][Full Text] [Related]
19. Reproducibility of computational workflows is automated using continuous analysis.
Beaulieu-Jones BK; Greene CS
Nat Biotechnol; 2017 Apr; 35(4):342-346. PubMed ID: 28288103
[TBL] [Abstract][Full Text] [Related]
20. APE in the Wild: Automated Exploration of Proteomics Workflows in the bio.tools Registry.
Kasalica V; Schwämmle V; Palmblad M; Ison J; Lamprecht AL
J Proteome Res; 2021 Apr; 20(4):2157-2165. PubMed ID: 33720735
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]