These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

235 related articles for article (PubMed ID: 27798116)

  • 21. Genetic regulatory signatures underlying islet gene expression and type 2 diabetes.
    Varshney A; Scott LJ; Welch RP; Erdos MR; Chines PS; Narisu N; Albanus RD; Orchard P; Wolford BN; Kursawe R; Vadlamudi S; Cannon ME; Didion JP; Hensley J; Kirilusha A; ; Bonnycastle LL; Taylor DL; Watanabe R; Mohlke KL; Boehnke M; Collins FS; Parker SC; Stitzel ML
    Proc Natl Acad Sci U S A; 2017 Feb; 114(9):2301-2306. PubMed ID: 28193859
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Quantifying deleterious effects of regulatory variants.
    Li S; Alvarez RV; Sharan R; Landsman D; Ovcharenko I
    Nucleic Acids Res; 2017 Mar; 45(5):2307-2317. PubMed ID: 27980060
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Atlas of Transcription Factor Binding Sites from ENCODE DNase Hypersensitivity Data across 27 Tissue Types.
    Funk CC; Casella AM; Jung S; Richards MA; Rodriguez A; Shannon P; Donovan-Maiye R; Heavner B; Chard K; Xiao Y; Glusman G; Ertekin-Taner N; Golde TE; Toga A; Hood L; Van Horn JD; Kesselman C; Foster I; Madduri R; Price ND; Ament SA
    Cell Rep; 2020 Aug; 32(7):108029. PubMed ID: 32814038
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Subcutaneous adipose tissue splice quantitative trait loci reveal differences in isoform usage associated with cardiometabolic traits.
    Brotman SM; Raulerson CK; Vadlamudi S; Currin KW; Shen Q; Parsons VA; Iyengar AK; Roman TS; Furey TS; Kuusisto J; Collins FS; Boehnke M; Laakso M; Pajukanta P; Mohlke KL
    Am J Hum Genet; 2022 Jan; 109(1):66-80. PubMed ID: 34995504
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Trans-Ancestral Fine-Mapping and Epigenetic Annotation as Tools to Delineate Functionally Relevant Risk Alleles at
    Vyse TJ; Cunninghame Graham DS
    Int J Mol Sci; 2020 Nov; 21(21):. PubMed ID: 33182226
    [No Abstract]   [Full Text] [Related]  

  • 26. Wellington-bootstrap: differential DNase-seq footprinting identifies cell-type determining transcription factors.
    Piper J; Assi SA; Cauchy P; Ladroue C; Cockerill PN; Bonifer C; Ott S
    BMC Genomics; 2015 Nov; 16():1000. PubMed ID: 26608661
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Predicting regulatory variants using a dense epigenomic mapped CNN model elucidated the molecular basis of trait-tissue associations.
    Pei G; Hu R; Dai Y; Manuel AM; Zhao Z; Jia P
    Nucleic Acids Res; 2021 Jan; 49(1):53-66. PubMed ID: 33300042
    [TBL] [Abstract][Full Text] [Related]  

  • 28. A practical guide for DNase-seq data analysis: from data management to common applications.
    Liu Y; Fu L; Kaufmann K; Chen D; Chen M
    Brief Bioinform; 2019 Sep; 20(5):1865-1877. PubMed ID: 30010713
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Sasquatch: predicting the impact of regulatory SNPs on transcription factor binding from cell- and tissue-specific DNase footprints.
    Schwessinger R; Suciu MC; McGowan SJ; Telenius J; Taylor S; Higgs DR; Hughes JR
    Genome Res; 2017 Oct; 27(10):1730-1742. PubMed ID: 28904015
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Mapping nucleosome positions using DNase-seq.
    Zhong J; Luo K; Winter PS; Crawford GE; Iversen ES; Hartemink AJ
    Genome Res; 2016 Mar; 26(3):351-64. PubMed ID: 26772197
    [TBL] [Abstract][Full Text] [Related]  

  • 31. GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding.
    Zeng H; Hashimoto T; Kang DD; Gifford DK
    Bioinformatics; 2016 Feb; 32(4):490-6. PubMed ID: 26476779
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Predicting cell-type-specific gene expression from regions of open chromatin.
    Natarajan A; Yardimci GG; Sheffield NC; Crawford GE; Ohler U
    Genome Res; 2012 Sep; 22(9):1711-22. PubMed ID: 22955983
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Differential chromatin profiles partially determine transcription factor binding.
    Chen R; Gifford DK
    PLoS One; 2017; 12(7):e0179411. PubMed ID: 28704389
    [TBL] [Abstract][Full Text] [Related]  

  • 34. TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence.
    Ouyang N; Boyle AP
    Genome Res; 2020 Jul; 30(7):1040-1046. PubMed ID: 32660981
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Predicting causal variants affecting expression by using whole-genome sequencing and RNA-seq from multiple human tissues.
    Brown AA; ViƱuela A; Delaneau O; Spector TD; Small KS; Dermitzakis ET
    Nat Genet; 2017 Dec; 49(12):1747-1751. PubMed ID: 29058714
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Genetic effects on liver chromatin accessibility identify disease regulatory variants.
    Currin KW; Erdos MR; Narisu N; Rai V; Vadlamudi S; Perrin HJ; Idol JR; Yan T; Albanus RD; Broadaway KA; Etheridge AS; Bonnycastle LL; Orchard P; Didion JP; Chaudhry AS; ; Innocenti F; Schuetz EG; Scott LJ; Parker SCJ; Collins FS; Mohlke KL
    Am J Hum Genet; 2021 Jul; 108(7):1169-1189. PubMed ID: 34038741
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Genome-wide footprinting: ready for prime time?
    Sung MH; Baek S; Hager GL
    Nat Methods; 2016 Mar; 13(3):222-228. PubMed ID: 26914206
    [TBL] [Abstract][Full Text] [Related]  

  • 38. DNA-binding factor footprints and enhancer RNAs identify functional non-coding genetic variants.
    Biddie SC; Weykopf G; Hird EF; Friman ET; Bickmore WA
    Genome Biol; 2024 Aug; 25(1):208. PubMed ID: 39107801
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Regulatory SNPs: Altered Transcription Factor Binding Sites Implicated in Complex Traits and Diseases.
    Degtyareva AO; Antontseva EV; Merkulova TI
    Int J Mol Sci; 2021 Jun; 22(12):. PubMed ID: 34208629
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Which Genetics Variants in DNase-Seq Footprints Are More Likely to Alter Binding?
    Moyerbrailean GA; Kalita CA; Harvey CT; Wen X; Luca F; Pique-Regi R
    PLoS Genet; 2016 Feb; 12(2):e1005875. PubMed ID: 26901046
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 12.