These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

87 related articles for article (PubMed ID: 27831898)

  • 1. A Characteristic-Based Framework for Multiple Sequence Aligners.
    Rubio-Largo A; Vanneschi L; Castelli M; Vega-Rodriguez MA
    IEEE Trans Cybern; 2018 Jan; 48(1):41-51. PubMed ID: 27831898
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Who watches the watchmen? An appraisal of benchmarks for multiple sequence alignment.
    Iantorno S; Gori K; Goldman N; Gil M; Dessimoz C
    Methods Mol Biol; 2014; 1079():59-73. PubMed ID: 24170395
    [TBL] [Abstract][Full Text] [Related]  

  • 3. AlexSys: a knowledge-based expert system for multiple sequence alignment construction and analysis.
    Aniba MR; Poch O; Marchler-Bauer A; Thompson JD
    Nucleic Acids Res; 2010 Oct; 38(19):6338-49. PubMed ID: 20530533
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Learning Parameter-Advising Sets for Multiple Sequence Alignment.
    DeBlasio D; Kececioglu J
    IEEE/ACM Trans Comput Biol Bioinform; 2017; 14(5):1028-1041. PubMed ID: 28991725
    [TBL] [Abstract][Full Text] [Related]  

  • 5. On closing the inopportune gap with consistency transformation and iterative refinement.
    João M; Sena AC; Rebello VEF
    PLoS One; 2023; 18(7):e0287483. PubMed ID: 37440507
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Class of multiple sequence alignment algorithm affects genomic analysis.
    Blackburne BP; Whelan S
    Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Characterization of multiple sequence alignment errors using complete-likelihood score and position-shift map.
    Ezawa K
    BMC Bioinformatics; 2016 Mar; 17():133. PubMed ID: 26992851
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A protein-protein interaction network aligner study in the multi-objective domain.
    Menor-Flores M; Vega-Rodríguez MA
    Comput Methods Programs Biomed; 2024 Jun; 250():108188. PubMed ID: 38657382
    [TBL] [Abstract][Full Text] [Related]  

  • 9. OXBench: a benchmark for evaluation of protein multiple sequence alignment accuracy.
    Raghava GP; Searle SM; Audley PC; Barber JD; Barton GJ
    BMC Bioinformatics; 2003 Oct; 4():47. PubMed ID: 14552658
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Evaluation and assessment of read-mapping by multiple next-generation sequencing aligners based on genome-wide characteristics.
    Thankaswamy-Kosalai S; Sen P; Nookaew I
    Genomics; 2017 Jul; 109(3-4):186-191. PubMed ID: 28286147
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
    Lu DV; Brown RH; Arumugam M; Brent MR
    Bioinformatics; 2009 Jul; 25(13):1587-93. PubMed ID: 19414532
    [TBL] [Abstract][Full Text] [Related]  

  • 12. A polynomial time solvable formulation of multiple sequence alignment.
    Sze SH; Lu Y; Yang Q
    J Comput Biol; 2006 Mar; 13(2):309-19. PubMed ID: 16597242
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Alignment Modulates Ancestral Sequence Reconstruction Accuracy.
    Vialle RA; Tamuri AU; Goldman N
    Mol Biol Evol; 2018 Jul; 35(7):1783-1797. PubMed ID: 29618097
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MSAProbs: multiple sequence alignment based on pair hidden Markov models and partition function posterior probabilities.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2010 Aug; 26(16):1958-64. PubMed ID: 20576627
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
    Gotoh O
    J Mol Biol; 1996 Dec; 264(4):823-38. PubMed ID: 8980688
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost.
    Yamada S; Gotoh O; Yamana H
    BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519
    [TBL] [Abstract][Full Text] [Related]  

  • 17. DNA reference alignment benchmarks based on tertiary structure of encoded proteins.
    Carroll H; Beckstead W; O'Connor T; Ebbert M; Clement M; Snell Q; McClellan D
    Bioinformatics; 2007 Oct; 23(19):2648-9. PubMed ID: 17686799
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Segment-based multiple sequence alignment.
    Rausch T; Emde AK; Weese D; Döring A; Notredame C; Reinert K
    Bioinformatics; 2008 Aug; 24(16):i187-92. PubMed ID: 18689823
    [TBL] [Abstract][Full Text] [Related]  

  • 19. An improved scoring method for protein residue conservation and multiple sequence alignment.
    Nguyen KD; Pan Y
    IEEE Trans Nanobioscience; 2011 Dec; 10(4):275-85. PubMed ID: 22271798
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Multiple sequence alignment with affine gap by using multi-objective genetic algorithm.
    Kaya M; Sarhan A; Alhajj R
    Comput Methods Programs Biomed; 2014 Apr; 114(1):38-49. PubMed ID: 24534604
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.