159 related articles for article (PubMed ID: 27835690)
1. Vidjil: A Web Platform for Analysis of High-Throughput Repertoire Sequencing.
Duez M; Giraud M; Herbert R; Rocher T; Salson M; Thonier F
PLoS One; 2016; 11(11):e0166126. PubMed ID: 27835690
[TBL] [Abstract][Full Text] [Related]
2. Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing.
Giraud M; Salson M; Duez M; Villenet C; Quief S; Caillault A; Grardel N; Roumier C; Preudhomme C; Figeac M
BMC Genomics; 2014 May; 15(1):409. PubMed ID: 24885090
[TBL] [Abstract][Full Text] [Related]
3. Multi-loci diagnosis of acute lymphoblastic leukaemia with high-throughput sequencing and bioinformatics analysis.
Ferret Y; Caillault A; Sebda S; Duez M; Grardel N; Duployez N; Villenet C; Figeac M; Preudhomme C; Salson M; Giraud M
Br J Haematol; 2016 May; 173(3):413-20. PubMed ID: 26898266
[TBL] [Abstract][Full Text] [Related]
4. ASAP - A Webserver for Immunoglobulin-Sequencing Analysis Pipeline.
Avram O; Vaisman-Mentesh A; Yehezkel D; Ashkenazy H; Pupko T; Wine Y
Front Immunol; 2018; 9():1686. PubMed ID: 30105017
[TBL] [Abstract][Full Text] [Related]
5. VDJviz: a versatile browser for immunogenomics data.
Bagaev DV; Zvyagin IV; Putintseva EV; Izraelson M; Britanova OV; Chudakov DM; Shugay M
BMC Genomics; 2016 Jun; 17():453. PubMed ID: 27297497
[TBL] [Abstract][Full Text] [Related]
6. IMGT(®) tools for the nucleotide analysis of immunoglobulin (IG) and T cell receptor (TR) V-(D)-J repertoires, polymorphisms, and IG mutations: IMGT/V-QUEST and IMGT/HighV-QUEST for NGS.
Alamyar E; Duroux P; Lefranc MP; Giudicelli V
Methods Mol Biol; 2012; 882():569-604. PubMed ID: 22665256
[TBL] [Abstract][Full Text] [Related]
7. VDJServer: A Cloud-Based Analysis Portal and Data Commons for Immune Repertoire Sequences and Rearrangements.
Christley S; Scarborough W; Salinas E; Rounds WH; Toby IT; Fonner JM; Levin MK; Kim M; Mock SA; Jordan C; Ostmeyer J; Buntzman A; Rubelt F; Davila ML; Monson NL; Scheuermann RH; Cowell LG
Front Immunol; 2018; 9():976. PubMed ID: 29867956
[TBL] [Abstract][Full Text] [Related]
8. VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.
Toby IT; Levin MK; Salinas EA; Christley S; Bhattacharya S; Breden F; Buntzman A; Corrie B; Fonner J; Gupta NT; Hershberg U; Marthandan N; Rosenfeld A; Rounds W; Rubelt F; Scarborough W; Scott JK; Uduman M; Vander Heiden JA; Scheuermann RH; Monson N; Kleinstein SH; Cowell LG
BMC Bioinformatics; 2016 Oct; 17(Suppl 13):333. PubMed ID: 27766961
[TBL] [Abstract][Full Text] [Related]
9. Tracy: basecalling, alignment, assembly and deconvolution of sanger chromatogram trace files.
Rausch T; Fritz MH; Untergasser A; Benes V
BMC Genomics; 2020 Mar; 21(1):230. PubMed ID: 32171249
[TBL] [Abstract][Full Text] [Related]
10. Automated analysis of high-throughput B-cell sequencing data reveals a high frequency of novel immunoglobulin V gene segment alleles.
Gadala-Maria D; Yaari G; Uduman M; Kleinstein SH
Proc Natl Acad Sci U S A; 2015 Feb; 112(8):E862-70. PubMed ID: 25675496
[TBL] [Abstract][Full Text] [Related]
11. TCRklass: a new K-string-based algorithm for human and mouse TCR repertoire characterization.
Yang X; Liu D; Lv N; Zhao F; Liu F; Zou J; Chen Y; Xiao X; Wu J; Liu P; Gao J; Hu Y; Shi Y; Liu J; Zhang R; Chen C; Ma J; Gao GF; Zhu B
J Immunol; 2015 Jan; 194(1):446-54. PubMed ID: 25404364
[TBL] [Abstract][Full Text] [Related]
12. BRepertoire: a user-friendly web server for analysing antibody repertoire data.
Margreitter C; Lu HC; Townsend C; Stewart A; Dunn-Walters DK; Fraternali F
Nucleic Acids Res; 2018 Jul; 46(W1):W264-W270. PubMed ID: 29668996
[TBL] [Abstract][Full Text] [Related]
13. Low-bandwidth and non-compute intensive remote identification of microbes from raw sequencing reads.
Gautier L; Lund O
PLoS One; 2013; 8(12):e83784. PubMed ID: 24391826
[TBL] [Abstract][Full Text] [Related]
14. VDJbase: an adaptive immune receptor genotype and haplotype database.
Omer A; Shemesh O; Peres A; Polak P; Shepherd AJ; Watson CT; Boyd SD; Collins AM; Lees W; Yaari G
Nucleic Acids Res; 2020 Jan; 48(D1):D1051-D1056. PubMed ID: 31602484
[TBL] [Abstract][Full Text] [Related]
15. Productive visualization of high-throughput sequencing data using the SeqCode open portable platform.
Blanco E; González-Ramírez M; Di Croce L
Sci Rep; 2021 Oct; 11(1):19545. PubMed ID: 34599234
[TBL] [Abstract][Full Text] [Related]
16. De novo assembly of bacterial genomes with repetitive DNA regions by dnaasm application.
Kuśmirek W; Nowak R
BMC Bioinformatics; 2018 Jul; 19(1):273. PubMed ID: 30021513
[TBL] [Abstract][Full Text] [Related]
17. Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization.
Kim B; Ali T; Hosmer S; Krampis K
Bioinformatics; 2016 Jul; 32(13):2050-2. PubMed ID: 27153572
[TBL] [Abstract][Full Text] [Related]
18. Eoulsan: a cloud computing-based framework facilitating high throughput sequencing analyses.
Jourdren L; Bernard M; Dillies MA; Le Crom S
Bioinformatics; 2012 Jun; 28(11):1542-3. PubMed ID: 22492314
[TBL] [Abstract][Full Text] [Related]
19. VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium.
Bagaev DV; Vroomans RMA; Samir J; Stervbo U; Rius C; Dolton G; Greenshields-Watson A; Attaf M; Egorov ES; Zvyagin IV; Babel N; Cole DK; Godkin AJ; Sewell AK; Kesmir C; Chudakov DM; Luciani F; Shugay M
Nucleic Acids Res; 2020 Jan; 48(D1):D1057-D1062. PubMed ID: 31588507
[TBL] [Abstract][Full Text] [Related]
20. ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences.
Lee B; Hong T; Byun SJ; Woo T; Choi YJ
Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W159-62. PubMed ID: 17526512
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
