444 related articles for article (PubMed ID: 27840290)
1. DO-RIP-seq to quantify RNA binding sites transcriptome-wide.
Nicholson CO; Friedersdorf MB; Bisogno LS; Keene JD
Methods; 2017 Apr; 118-119():16-23. PubMed ID: 27840290
[TBL] [Abstract][Full Text] [Related]
2. Quantifying RNA binding sites transcriptome-wide using DO-RIP-seq.
Nicholson CO; Friedersdorf M; Keene JD
RNA; 2017 Jan; 23(1):32-46. PubMed ID: 27742911
[TBL] [Abstract][Full Text] [Related]
3. Computational analysis of CLIP-seq data.
Uhl M; Houwaart T; Corrado G; Wright PR; Backofen R
Methods; 2017 Apr; 118-119():60-72. PubMed ID: 28254606
[TBL] [Abstract][Full Text] [Related]
4. Computational Analysis of RNA-Protein Interactions via Deep Sequencing.
Li L; Förstner KU; Chao Y
Methods Mol Biol; 2018; 1751():171-182. PubMed ID: 29508297
[TBL] [Abstract][Full Text] [Related]
5. Transcriptome-wide Identification of RNA-binding Protein Binding Sites Using Photoactivatable-Ribonucleoside-Enhanced Crosslinking Immunoprecipitation (PAR-CLIP).
Maatz H; Kolinski M; Hubner N; Landthaler M
Curr Protoc Mol Biol; 2017 Apr; 118():27.6.1-27.6.19. PubMed ID: 28369676
[TBL] [Abstract][Full Text] [Related]
6. PAR-CLIP and streamlined small RNA cDNA library preparation protocol for the identification of RNA binding protein target sites.
Benhalevy D; McFarland HL; Sarshad AA; Hafner M
Methods; 2017 Apr; 118-119():41-49. PubMed ID: 27871973
[TBL] [Abstract][Full Text] [Related]
7. Optimization of PAR-CLIP for transcriptome-wide identification of binding sites of RNA-binding proteins.
Garzia A; Meyer C; Morozov P; Sajek M; Tuschl T
Methods; 2017 Apr; 118-119():24-40. PubMed ID: 27765618
[TBL] [Abstract][Full Text] [Related]
8. Cross-linking and immunoprecipitation of nuclear RNA-binding proteins.
Li Q; Uemura Y; Kawahara Y
Methods Mol Biol; 2015; 1262():247-63. PubMed ID: 25555586
[TBL] [Abstract][Full Text] [Related]
9. Transcriptome-wide identification of in vivo interactions between RNAs and RNA-binding proteins by RIP and PAR-CLIP assays.
González-Buendía E; Saldaña-Meyer R; Meier K; Recillas-Targa F
Methods Mol Biol; 2015; 1288():413-28. PubMed ID: 25827894
[TBL] [Abstract][Full Text] [Related]
10. CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.
Van Nostrand EL; Gelboin-Burkhart C; Wang R; Pratt GA; Blue SM; Yeo GW
Methods; 2017 Apr; 118-119():50-59. PubMed ID: 28003131
[TBL] [Abstract][Full Text] [Related]
11. A combined sequence and structure based method for discovering enriched motifs in RNA from in vivo binding data.
Polishchuk M; Paz I; Kohen R; Mesika R; Yakhini Z; Mandel-Gutfreund Y
Methods; 2017 Apr; 118-119():73-81. PubMed ID: 28274760
[TBL] [Abstract][Full Text] [Related]
12. Transcriptomic-Wide Discovery of Direct and Indirect HuR RNA Targets in Activated CD4+ T Cells.
Techasintana P; Davis JW; Gubin MM; Magee JD; Atasoy U
PLoS One; 2015; 10(7):e0129321. PubMed ID: 26162078
[TBL] [Abstract][Full Text] [Related]
13. RNA interactome capture in yeast.
Beckmann BM
Methods; 2017 Apr; 118-119():82-92. PubMed ID: 27993706
[TBL] [Abstract][Full Text] [Related]
14. Genome-Wide Profiling of RNA-Protein Interactions Using CLIP-Seq.
Stork C; Zheng S
Methods Mol Biol; 2016; 1421():137-51. PubMed ID: 26965263
[TBL] [Abstract][Full Text] [Related]
15. Protein Interaction Profile Sequencing (PIP-seq).
Foley SW; Gregory BD
Curr Protoc Mol Biol; 2016 Oct; 116():27.5.1-27.5.15. PubMed ID: 27723083
[TBL] [Abstract][Full Text] [Related]
16. PAR-CliP--a method to identify transcriptome-wide the binding sites of RNA binding proteins.
Hafner M; Landthaler M; Burger L; Khorshid M; Hausser J; Berninger P; Rothballer A; Ascano M; Jungkamp AC; Munschauer M; Ulrich A; Wardle GS; Dewell S; Zavolan M; Tuschl T
J Vis Exp; 2010 Jul; (41):. PubMed ID: 20644507
[TBL] [Abstract][Full Text] [Related]
17. RIP-Seq data analysis to determine RNA-protein associations.
Zambelli F; Pavesi G
Methods Mol Biol; 2015; 1269():293-303. PubMed ID: 25577386
[TBL] [Abstract][Full Text] [Related]
18. Mapping the Transcriptome-Wide Landscape of RBP Binding Sites Using gPAR-CLIP-seq: Bioinformatic Analysis.
Freeberg MA; Kim JK
Methods Mol Biol; 2016; 1361():91-104. PubMed ID: 26483018
[TBL] [Abstract][Full Text] [Related]
19. Investigating RNA-Protein Interactions in Neisseria meningitidis by RIP-Seq Analysis.
Heidrich N; Bauriedl S; Schoen C
Methods Mol Biol; 2019; 1969():33-49. PubMed ID: 30877668
[TBL] [Abstract][Full Text] [Related]
20. Leveraging cross-link modification events in CLIP-seq for motif discovery.
Bahrami-Samani E; Penalva LO; Smith AD; Uren PJ
Nucleic Acids Res; 2015 Jan; 43(1):95-103. PubMed ID: 25505146
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
