These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

986 related articles for article (PubMed ID: 27842494)

  • 41. Integration of Technical, Bioinformatic, and Variant Assessment Approaches in the Validation of a Targeted Next-Generation Sequencing Panel for Myeloid Malignancies.
    Thomas M; Sukhai MA; Zhang T; Dolatshahi R; Harbi D; Garg S; Misyura M; Pugh T; Stockley TL; Kamel-Reid S
    Arch Pathol Lab Med; 2017 Jun; 141(6):759-775. PubMed ID: 28557600
    [TBL] [Abstract][Full Text] [Related]  

  • 42. ExScalibur: A High-Performance Cloud-Enabled Suite for Whole Exome Germline and Somatic Mutation Identification.
    Bao R; Hernandez K; Huang L; Kang W; Bartom E; Onel K; Volchenboum S; Andrade J
    PLoS One; 2015; 10(8):e0135800. PubMed ID: 26271043
    [TBL] [Abstract][Full Text] [Related]  

  • 43. A review of somatic single nucleotide variant calling algorithms for next-generation sequencing data.
    Xu C
    Comput Struct Biotechnol J; 2018; 16():15-24. PubMed ID: 29552334
    [TBL] [Abstract][Full Text] [Related]  

  • 44. Feature-based classifiers for somatic mutation detection in tumour-normal paired sequencing data.
    Ding J; Bashashati A; Roth A; Oloumi A; Tse K; Zeng T; Haffari G; Hirst M; Marra MA; Condon A; Aparicio S; Shah SP
    Bioinformatics; 2012 Jan; 28(2):167-75. PubMed ID: 22084253
    [TBL] [Abstract][Full Text] [Related]  

  • 45. From Wet-Lab to Variations: Concordance and Speed of Bioinformatics Pipelines for Whole Genome and Whole Exome Sequencing.
    Laurie S; Fernandez-Callejo M; Marco-Sola S; Trotta JR; Camps J; Chacón A; Espinosa A; Gut M; Gut I; Heath S; Beltran S
    Hum Mutat; 2016 Dec; 37(12):1263-1271. PubMed ID: 27604516
    [TBL] [Abstract][Full Text] [Related]  

  • 46. Detection of Circulating Tumor DNA with a Single-Molecule Sequencing Analysis Validated for Targeted and Immunotherapy Selection.
    Atkins A; Gupta P; Zhang BM; Tsai WS; Lucas J; Javey M; Vora A; Mei R
    Mol Diagn Ther; 2019 Aug; 23(4):521-535. PubMed ID: 31209714
    [TBL] [Abstract][Full Text] [Related]  

  • 47. SomatoSim: precision simulation of somatic single nucleotide variants.
    Hawari MA; Hong CS; Biesecker LG
    BMC Bioinformatics; 2021 Mar; 22(1):109. PubMed ID: 33676403
    [TBL] [Abstract][Full Text] [Related]  

  • 48. Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.
    Trubetskoy V; Rodriguez A; Dave U; Campbell N; Crawford EL; Cook EH; Sutcliffe JS; Foster I; Madduri R; Cox NJ; Davis LK
    Bioinformatics; 2015 Jan; 31(2):187-93. PubMed ID: 25270638
    [TBL] [Abstract][Full Text] [Related]  

  • 49. MutAid: Sanger and NGS Based Integrated Pipeline for Mutation Identification, Validation and Annotation in Human Molecular Genetics.
    Pandey RV; Pabinger S; Kriegner A; Weinhäusel A
    PLoS One; 2016; 11(2):e0147697. PubMed ID: 26840129
    [TBL] [Abstract][Full Text] [Related]  

  • 50. SMuRF: portable and accurate ensemble prediction of somatic mutations.
    Huang W; Guo YA; Muthukumar K; Baruah P; Chang MM; Jacobsen Skanderup A
    Bioinformatics; 2019 Sep; 35(17):3157-3159. PubMed ID: 30649191
    [TBL] [Abstract][Full Text] [Related]  

  • 51. Xome-Blender: A novel cancer genome simulator.
    Semeraro R; Orlandini V; Magi A
    PLoS One; 2018; 13(4):e0194472. PubMed ID: 29621252
    [TBL] [Abstract][Full Text] [Related]  

  • 52. Leveraging Spatial Variation in Tumor Purity for Improved Somatic Variant Calling of Archival Tumor Only Samples.
    Halperin RF; Liang WS; Kulkarni S; Tassone EE; Adkins J; Enriquez D; Tran NL; Hank NC; Newell J; Kodira C; Korn R; Berens ME; Kim S; Byron SA
    Front Oncol; 2019; 9():119. PubMed ID: 30949446
    [TBL] [Abstract][Full Text] [Related]  

  • 53. CNV Radar: an improved method for somatic copy number alteration characterization in oncology.
    Soong D; Stratford J; Avet-Loiseau H; Bahlis N; Davies F; Dispenzieri A; Sasser AK; Schecter JM; Qi M; Brown C; Jones W; Keats JJ; Auclair D; Chiu C; Powers J; Schaffer M
    BMC Bioinformatics; 2020 Mar; 21(1):98. PubMed ID: 32143562
    [TBL] [Abstract][Full Text] [Related]  

  • 54. VarDict: a novel and versatile variant caller for next-generation sequencing in cancer research.
    Lai Z; Markovets A; Ahdesmaki M; Chapman B; Hofmann O; McEwen R; Johnson J; Dougherty B; Barrett JC; Dry JR
    Nucleic Acids Res; 2016 Jun; 44(11):e108. PubMed ID: 27060149
    [TBL] [Abstract][Full Text] [Related]  

  • 55. Quick, sensitive and specific detection and evaluation of quantification of minor variants by high-throughput sequencing.
    Leung RK; Dong ZQ; Sa F; Chong CM; Lei SW; Tsui SK; Lee SM
    Mol Biosyst; 2014 Feb; 10(2):206-14. PubMed ID: 24264059
    [TBL] [Abstract][Full Text] [Related]  

  • 56. Comparison of Next-Generation Sequencing Panels and Platforms for Detection and Verification of Somatic Tumor Variants for Clinical Diagnostics.
    Misyura M; Zhang T; Sukhai MA; Thomas M; Garg S; Kamel-Reid S; Stockley TL
    J Mol Diagn; 2016 Nov; 18(6):842-850. PubMed ID: 27770852
    [TBL] [Abstract][Full Text] [Related]  

  • 57. LoLoPicker: detecting low allelic-fraction variants from low-quality cancer samples.
    Carrot-Zhang J; Majewski J
    Oncotarget; 2017 Jun; 8(23):37032-37040. PubMed ID: 28416765
    [TBL] [Abstract][Full Text] [Related]  

  • 58. ISOWN: accurate somatic mutation identification in the absence of normal tissue controls.
    Kalatskaya I; Trinh QM; Spears M; McPherson JD; Bartlett JMS; Stein L
    Genome Med; 2017 Jun; 9(1):59. PubMed ID: 28659176
    [TBL] [Abstract][Full Text] [Related]  

  • 59. Optimized pipeline of MuTect and GATK tools to improve the detection of somatic single nucleotide polymorphisms in whole-exome sequencing data.
    do Valle ÍF; Giampieri E; Simonetti G; Padella A; Manfrini M; Ferrari A; Papayannidis C; Zironi I; Garonzi M; Bernardi S; Delledonne M; Martinelli G; Remondini D; Castellani G
    BMC Bioinformatics; 2016 Nov; 17(Suppl 12):341. PubMed ID: 28185561
    [TBL] [Abstract][Full Text] [Related]  

  • 60. The use of technical replication for detection of low-level somatic mutations in next-generation sequencing.
    Kim J; Kim D; Lim JS; Maeng JH; Son H; Kang HC; Nam H; Lee JH; Kim S
    Nat Commun; 2019 Mar; 10(1):1047. PubMed ID: 30837471
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 50.