438 related articles for article (PubMed ID: 27842515)
1. Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification.
Wagner J; Coupland P; Browne HP; Lawley TD; Francis SC; Parkhill J
BMC Microbiol; 2016 Nov; 16(1):274. PubMed ID: 27842515
[TBL] [Abstract][Full Text] [Related]
2. Different next generation sequencing platforms produce different microbial profiles and diversity in cystic fibrosis sputum.
Hahn A; Sanyal A; Perez GF; Colberg-Poley AM; Campos J; Rose MC; Pérez-Losada M
J Microbiol Methods; 2016 Nov; 130():95-99. PubMed ID: 27609714
[TBL] [Abstract][Full Text] [Related]
3. Full-length 16S rRNA gene sequencing by PacBio improves taxonomic resolution in human microbiome samples.
Buetas E; Jordán-López M; López-Roldán A; D'Auria G; Martínez-Priego L; De Marco G; Carda-Diéguez M; Mira A
BMC Genomics; 2024 Mar; 25(1):310. PubMed ID: 38528457
[TBL] [Abstract][Full Text] [Related]
4. Optimisation of methods for bacterial skin microbiome investigation: primer selection and comparison of the 454 versus MiSeq platform.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ho P; Upton M; Barton A
BMC Microbiol; 2017 Jan; 17(1):23. PubMed ID: 28109256
[TBL] [Abstract][Full Text] [Related]
5. Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes.
Earl JP; Adappa ND; Krol J; Bhat AS; Balashov S; Ehrlich RL; Palmer JN; Workman AD; Blasetti M; Sen B; Hammond J; Cohen NA; Ehrlich GD; Mell JC
Microbiome; 2018 Oct; 6(1):190. PubMed ID: 30352611
[TBL] [Abstract][Full Text] [Related]
6. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
7. Improved OTU-picking using long-read 16S rRNA gene amplicon sequencing and generic hierarchical clustering.
Franzén O; Hu J; Bao X; Itzkowitz SH; Peter I; Bashir A
Microbiome; 2015 Oct; 3():43. PubMed ID: 26434730
[TBL] [Abstract][Full Text] [Related]
8. Comparison of Illumina versus Nanopore 16S rRNA Gene Sequencing of the Human Nasal Microbiota.
Heikema AP; Horst-Kreft D; Boers SA; Jansen R; Hiltemann SD; de Koning W; Kraaij R; de Ridder MAJ; van Houten CB; Bont LJ; Stubbs AP; Hays JP
Genes (Basel); 2020 Sep; 11(9):. PubMed ID: 32967250
[TBL] [Abstract][Full Text] [Related]
9. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
10. Evaluation of Full-Length Versus V4-Region 16S rRNA Sequencing for Phylogenetic Analysis of Mouse Intestinal Microbiota After a Dietary Intervention.
Katiraei S; Anvar Y; Hoving L; Berbée JFP; van Harmelen V; Willems van Dijk K
Curr Microbiol; 2022 Jul; 79(9):276. PubMed ID: 35907023
[TBL] [Abstract][Full Text] [Related]
11. Pipeline for amplifying and analyzing amplicons of the V1-V3 region of the 16S rRNA gene.
Allen HK; Bayles DO; Looft T; Trachsel J; Bass BE; Alt DP; Bearson SM; Nicholson T; Casey TA
BMC Res Notes; 2016 Aug; 9():380. PubMed ID: 27485508
[TBL] [Abstract][Full Text] [Related]
12. Improved performance of the PacBio SMRT technology for 16S rDNA sequencing.
Mosher JJ; Bowman B; Bernberg EL; Shevchenko O; Kan J; Korlach J; Kaplan LA
J Microbiol Methods; 2014 Sep; 104():59-60. PubMed ID: 24978594
[TBL] [Abstract][Full Text] [Related]
13. Comparison of iSeq and MiSeq as the two platforms for 16S rRNA sequencing in the study of the gut of rat microbiome.
Salamon D; Zapała B; Krawczyk A; Potasiewicz A; Nikiforuk A; Stój A; Gosiewski T
Appl Microbiol Biotechnol; 2022 Nov; 106(22):7671-7681. PubMed ID: 36322250
[TBL] [Abstract][Full Text] [Related]
14. High-resolution microbiome analysis enabled by linking of 16S rRNA gene sequences with adjacent genomic contexts.
Kapustina Ž; Medžiūnė J; Alzbutas G; Rokaitis I; Matjošaitis K; Mackevičius G; Žeimytė S; Karpus L; Lubys A
Microb Genom; 2021 Sep; 7(9):. PubMed ID: 34473015
[TBL] [Abstract][Full Text] [Related]
15. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
[TBL] [Abstract][Full Text] [Related]
16. Amplicon Sequence Variants Artificially Split Bacterial Genomes into Separate Clusters.
Schloss PD
mSphere; 2021 Aug; 6(4):e0019121. PubMed ID: 34287003
[TBL] [Abstract][Full Text] [Related]
17. Efficacy of a 3rd generation high-throughput sequencing platform for analyses of 16S rRNA genes from environmental samples.
Mosher JJ; Bernberg EL; Shevchenko O; Kan J; Kaplan LA
J Microbiol Methods; 2013 Nov; 95(2):175-81. PubMed ID: 23999276
[TBL] [Abstract][Full Text] [Related]
18. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
[TBL] [Abstract][Full Text] [Related]
19. 16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis.
Zhang K; Lin R; Chang Y; Zhou Q; Zhang Z
PeerJ; 2022; 10():e14043. PubMed ID: 36172503
[TBL] [Abstract][Full Text] [Related]
20. Evaluation of 16S rRNA gene sequencing for species and strain-level microbiome analysis.
Johnson JS; Spakowicz DJ; Hong BY; Petersen LM; Demkowicz P; Chen L; Leopold SR; Hanson BM; Agresta HO; Gerstein M; Sodergren E; Weinstock GM
Nat Commun; 2019 Nov; 10(1):5029. PubMed ID: 31695033
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]