148 related articles for article (PubMed ID: 27846272)
1. gmos: Rapid Detection of Genome Mosaicism over Short Evolutionary Distances.
Domazet-Lošo M; Domazet-Lošo T
PLoS One; 2016; 11(11):e0166602. PubMed ID: 27846272
[TBL] [Abstract][Full Text] [Related]
2. Genome alignment, evolution of prokaryotic genome organization, and prediction of gene function using genomic context.
Wolf YI; Rogozin IB; Kondrashov AS; Koonin EV
Genome Res; 2001 Mar; 11(3):356-72. PubMed ID: 11230160
[TBL] [Abstract][Full Text] [Related]
3. andi: fast and accurate estimation of evolutionary distances between closely related genomes.
Haubold B; Klötzl F; Pfaffelhuber P
Bioinformatics; 2015 Apr; 31(8):1169-75. PubMed ID: 25504847
[TBL] [Abstract][Full Text] [Related]
4. PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.
Fong C; Rohmer L; Radey M; Wasnick M; Brittnacher MJ
BMC Bioinformatics; 2008 Mar; 9():170. PubMed ID: 18366802
[TBL] [Abstract][Full Text] [Related]
5. Aligning the unalignable: bacteriophage whole genome alignments.
Bérard S; Chateau A; Pompidor N; Guertin P; Bergeron A; Swenson KM
BMC Bioinformatics; 2016 Jan; 17():30. PubMed ID: 26757899
[TBL] [Abstract][Full Text] [Related]
6. CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes.
Uchiyama I; Higuchi T; Kobayashi I
BMC Bioinformatics; 2006 Oct; 7():472. PubMed ID: 17062155
[TBL] [Abstract][Full Text] [Related]
7. Alignment-free detection of local similarity among viral and bacterial genomes.
Domazet-Lošo M; Haubold B
Bioinformatics; 2011 Jun; 27(11):1466-72. PubMed ID: 21471011
[TBL] [Abstract][Full Text] [Related]
8. Exact and complete short-read alignment to microbial genomes using Graphics Processing Unit programming.
Blom J; Jakobi T; Doppmeier D; Jaenicke S; Kalinowski J; Stoye J; Goesmann A
Bioinformatics; 2011 May; 27(10):1351-8. PubMed ID: 21450712
[TBL] [Abstract][Full Text] [Related]
9. MISHIMA--a new method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data.
Kryukov K; Saitou N
BMC Bioinformatics; 2010 Mar; 11():142. PubMed ID: 20298584
[TBL] [Abstract][Full Text] [Related]
10. Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations.
Mostowy R; Croucher NJ; Andam CP; Corander J; Hanage WP; Marttinen P
Mol Biol Evol; 2017 May; 34(5):1167-1182. PubMed ID: 28199698
[TBL] [Abstract][Full Text] [Related]
11. PhyLAT: a phylogenetic local alignment tool.
Sun H; Buhler JD
Bioinformatics; 2012 May; 28(10):1336-44. PubMed ID: 22492645
[TBL] [Abstract][Full Text] [Related]
12. A universal operon predictor for prokaryotic genomes.
Li G; Che D; Xu Y
J Bioinform Comput Biol; 2009 Feb; 7(1):19-38. PubMed ID: 19226658
[TBL] [Abstract][Full Text] [Related]
13. Design of multiple sequence alignment algorithms on parallel, distributed memory supercomputers.
Church PC; Goscinski A; Holt K; Inouye M; Ghoting A; Makarychev K; Reumann M
Annu Int Conf IEEE Eng Med Biol Soc; 2011; 2011():924-7. PubMed ID: 22254462
[TBL] [Abstract][Full Text] [Related]
14. Multiple whole-genome alignments without a reference organism.
Dubchak I; Poliakov A; Kislyuk A; Brudno M
Genome Res; 2009 Apr; 19(4):682-9. PubMed ID: 19176791
[TBL] [Abstract][Full Text] [Related]
15. Mugsy: fast multiple alignment of closely related whole genomes.
Angiuoli SV; Salzberg SL
Bioinformatics; 2011 Feb; 27(3):334-42. PubMed ID: 21148543
[TBL] [Abstract][Full Text] [Related]
16. The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes.
Treangen TJ; Ondov BD; Koren S; Phillippy AM
Genome Biol; 2014; 15(11):524. PubMed ID: 25410596
[TBL] [Abstract][Full Text] [Related]
17. TruMatch--a BLAST post-processor that identifies bona fide sequence matches to genome assemblies.
Li W; Rehmeyer CJ; Staben C; Farman ML
Bioinformatics; 2005 May; 21(9):2097-8. PubMed ID: 15671115
[TBL] [Abstract][Full Text] [Related]
18. Fast algorithms for large-scale genome alignment and comparison.
Delcher AL; Phillippy A; Carlton J; Salzberg SL
Nucleic Acids Res; 2002 Jun; 30(11):2478-83. PubMed ID: 12034836
[TBL] [Abstract][Full Text] [Related]
19. When whole-genome alignments just won't work: kSNP v2 software for alignment-free SNP discovery and phylogenetics of hundreds of microbial genomes.
Gardner SN; Hall BG
PLoS One; 2013; 8(12):e81760. PubMed ID: 24349125
[TBL] [Abstract][Full Text] [Related]
20. VCFtoTree: a user-friendly tool to construct locus-specific alignments and phylogenies from thousands of anthropologically relevant genome sequences.
Xu D; Jaber Y; Pavlidis P; Gokcumen O
BMC Bioinformatics; 2017 Sep; 18(1):426. PubMed ID: 28950836
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
